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vcfr: a package to manipulate and visualize variant call format data in R

Molecular ecology resources, 2017-01, Vol.17 (1), p.44-53

2017

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The genome of tolypocladium inflatum: evolution, organization, and expression of the cyclosporin biosynthetic gene cluster

PLoS genetics, 2013-06, Vol.9 (6), p.e1003496-e1003496

2013

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Genome-Wide Increased Copy Number is Associated with Emergence of Dominant Clones of the Irish Potato Famine Pathogen Phytophthora infestans

mBio, 2020-06, Vol.11 (3)

2020

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Stable predictive markers for Phytophthora sojae avirulence genes that impair infection of soybean uncovered by whole genome sequencing of 31 isolates

BMC biology, 2018-07, Vol.16 (1), p.80-80, Article 80

2018

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Population Diversity and Structure of Podosphaera macularis in the Pacific Northwestern United States and Other Populations

Phytopathology, 2020-05, Vol.110 (5), p.1105-1116

2020

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Inferring Variation in Copy Number Using High Throughput Sequencing Data in R

Frontiers in genetics, 2018-04, Vol.9, p.123-123

2018

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Genetic Variation within Clonal Lineages of Phytophthora infestans Revealed through Genotyping-By-Sequencing, and Implications for Late Blight Epidemiology

PloS one, 2016-11, Vol.11 (11), p.e0165690-e0165690

2016

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Taxonomic Considerations in Listing Subspecies Under the U.S. Endangered Species Act

Conservation biology, 2006-12, Vol.20 (6), p.1584-1594

2006

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Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore

BMC ecology, 2011-04, Vol.11 (1), p.10-10, Article 10

2011

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Phylogeography and population structure of the global, wide host-range hybrid pathogen Phytophthora × cambivora

IMA fungus, 2023-02, Vol.14 (1), p.4-4, Article 4

2023

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Targeted enrichment strategies for next-generation plant biology

American journal of botany, 2012-02, Vol.99 (2), p.291-311

2012

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Genotyping-by-Sequencing Reveals Fine-Scale Differentiation in Populations of Pseudoperonospora humuli

Phytopathology, 2019-10, Vol.109 (10), p.PHYTO12180485R-1810

2019

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Phytophthora community structure analyses in Oregon nurseries inform systems approaches to disease management

Phytopathology, 2014-10, Vol.104 (10), p.1052-1062

2014

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Population genetic structure and cryptic species of Plasmopara viticola in Australia

Phytopathology, 2019-11, Vol.109 (11), p.1975-1983

2019

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Phylogeography of the wide‐host range panglobal plant pathogen Phytophthora cinnamomi

Molecular ecology, 2021-10, Vol.30 (20), p.5164-5178

2021

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Development of a Diagnostic Assay for Race Differentiation of Podosphaera macularis

Plant disease, 2021-04, Vol.105 (4), p.965-971

2021

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Transcriptome-Derived Amplicon Sequencing Markers Elucidate the U.S. Podosphaera macularis Population Structure Across Feral and Commercial Plantings of Humulus lupulus

Phytopathology, 2021-01, Vol.111 (1), p.194-203

2021

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Genetic Differentiation and Clonal Expansion of Chinese Botrytis cinerea Populations from Tomato and Other Crops in China

Phytopathology, 2020-02, Vol.110 (2), p.428-439

2020

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SSR_pipeline: a bioinformatic infrastructure for identifying microsatellites from paired-end Illumina high-throughput DNA sequencing data

The Journal of heredity, 2013-11, Vol.104 (6), p.881-885

2013

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Genetic Diversity of Verticillium dahliae Isolates from Mint Detected with Genotyping by Sequencing

Phytopathology, 2019-11, Vol.109 (11), p.1966-1974

2019

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Morphometric architecture of the most taxon-rich species in the U.S. flora: Astragalus lentiginosus (Fabaceae)

American journal of botany, 2010-11, Vol.97 (11), p.1816-1826

Knaus, Brian J

2010

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Dual RNA-seq of the plant pathogen Phytophthora ramorum and its tanoak host

Tree genetics & genomes, 2014-06, Vol.10 (3), p.489-502

2014

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Phylogeography and population structure of the global, wide host-range hybrid pathogen Phytophthora x cambivora

IMA fungus, 2023-02, Vol.14 (1)

2023

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Multilocus analyses reveal little evidence for lineage-wide adaptive evolution within major clades of soft pines (Pinus subgenus Strobus)

Molecular ecology, 2013-11, Vol.22 (22), p.5635-5650

2013

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Microsatellite Primers for the Pacific Northwest Conifer Callitropsis nootkatensis (Cupressaceae)

Applications in plant sciences, 2013-09, Vol.1 (9), p.1300025-n/a

2013

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vcfr: a package to manipulate and visualize variant call format data in R

The genome of tolypocladium inflatum: evolution, organization, and expression of the cyclosporin biosynthetic gene cluster

Genome-Wide Increased Copy Number is Associated with Emergence of Dominant Clones of the Irish Potato Famine Pathogen Phytophthora infestans

Stable predictive markers for Phytophthora sojae avirulence genes that impair infection of soybean uncovered by whole genome sequencing of 31 isolates

Population Diversity and Structure of Podosphaera macularis in the Pacific Northwestern United States and Other Populations

Inferring Variation in Copy Number Using High Throughput Sequencing Data in R

Genetic Variation within Clonal Lineages of Phytophthora infestans Revealed through Genotyping-By-Sequencing, and Implications for Late Blight Epidemiology

Taxonomic Considerations in Listing Subspecies Under the U.S. Endangered Species Act

Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore

Phylogeography and population structure of the global, wide host-range hybrid pathogen Phytophthora × cambivora

Targeted enrichment strategies for next-generation plant biology

Genotyping-by-Sequencing Reveals Fine-Scale Differentiation in Populations of Pseudoperonospora humuli

Phytophthora community structure analyses in Oregon nurseries inform systems approaches to disease management

Population genetic structure and cryptic species of Plasmopara viticola in Australia

Phylogeography of the wide‐host range panglobal plant pathogen Phytophthora cinnamomi

Development of a Diagnostic Assay for Race Differentiation of Podosphaera macularis

Transcriptome-Derived Amplicon Sequencing Markers Elucidate the U.S. Podosphaera macularis Population Structure Across Feral and Commercial Plantings of Humulus lupulus

Genetic Differentiation and Clonal Expansion of Chinese Botrytis cinerea Populations from Tomato and Other Crops in China

SSR_pipeline: a bioinformatic infrastructure for identifying microsatellites from paired-end Illumina high-throughput DNA sequencing data

Genetic Diversity of Verticillium dahliae Isolates from Mint Detected with Genotyping by Sequencing

Morphometric architecture of the most taxon-rich species in the U.S. flora: Astragalus lentiginosus (Fabaceae)

Dual RNA-seq of the plant pathogen Phytophthora ramorum and its tanoak host

Phylogeography and population structure of the global, wide host-range hybrid pathogen Phytophthora x cambivora

Multilocus analyses reveal little evidence for lineage-wide adaptive evolution within major clades of soft pines (Pinus subgenus Strobus)

Microsatellite Primers for the Pacific Northwest Conifer Callitropsis nootkatensis (Cupressaceae)

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