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Metacoder: An R package for visualization and manipulation of community taxonomic diversity data

PLoS computational biology, 2017-02, Vol.13 (2), p.e1005404-e1005404

2017

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vcfr: a package to manipulate and visualize variant call format data in R

Molecular ecology resources, 2017-01, Vol.17 (1), p.44-53

2017

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Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality

Frontiers in genetics, 2015-06, Vol.6, p.208-208

2015

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effectR : An Expandable R Package to Predict Candidate RxLR and CRN Effectors in Oomycetes Using Motif Searches

Molecular plant-microbe interactions, 2019-09, Vol.32 (9), p.MPMI10180279TA-1076

2019

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Population Genomics of Fungal and Oomycete Pathogens

Annual review of phytopathology, 2016-08, Vol.54 (1), p.323-346

2016

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Ecology and Evolution of the Sudden Oak Death Pathogen Phytophthora ramorum

Annual review of phytopathology, 2019-08, Vol.57, p.301

2019

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Insights into evolving global populations of Phytophthora infestans via new complementary mtDNA haplotype markers and nuclear SSRs

PloS one, 2019-01, Vol.14 (1), p.e0208606-e0208606

2019

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Phylogeographic Approaches to Characterize the Emergence of Plant Pathogens

Phytopathology, 2021-01, Vol.111 (1), p.68-77

2021

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Diversification of plasmids in a genus of pathogenic and nitrogen-fixing bacteria

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2022-01, Vol.377 (1842), p.20200466

2022

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Host-induced aneuploidy and phenotypic diversification in the Sudden Oak Death pathogen Phytophthora ramorum

BMC genomics, 2016-05, Vol.17 (370), p.385-385, Article 385

2016

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Irish potato famine pathogen Phytophthora infestans originated in central Mexico rather than the Andes

Proceedings of the National Academy of Sciences - PNAS, 2014-06, Vol.111 (24), p.8791-8796

2014

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High-Quality, Phased Genomes of Phytophthora ramorum Clonal Lineages NA1 and EU1

Molecular plant-microbe interactions, 2022-04, Vol.35 (4), p.360-363

2022

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Are traded forest tree seeds a potential source of nonnative pests?

Ecological applications, 2019-10, Vol.29 (7), p.1-16

2019

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Plant Pathogen Phytophthora andina Emerged via Hybridization of an Unknown Phytophthora Species and the Irish Potato Famine Pathogen, P. infestans

PloS one, 2011-09, Vol.6 (9), p.e24543-e24543

2011

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Stable predictive markers for Phytophthora sojae avirulence genes that impair infection of soybean uncovered by whole genome sequencing of 31 isolates

BMC biology, 2018-07, Vol.16 (1), p.80-80, Article 80

2018

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Fungal Evolution in Anthropogenic Environments: Botrytis cinerea Populations Infecting Small Fruit Hosts in the Pacific Northwest Rapidly Adapt to Human-Induced Selection Pressures

Applied and environmental microbiology, 2020-04, Vol.86 (9), p.1

2020

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Population Genetic Analysis Infers Migration Pathways of Phytophthora ramorum in US Nurseries

PLoS pathogens, 2009-09, Vol.5 (9), p.e1000583-e1000583

2009

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Risk of Epidemic Development in Nurseries from Soil Inoculum of Phytophthora ramorum

Phytopathology, 2022-05, Vol.112 (5), p.1046-1054

2022

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Phytophthora community structure analyses in Oregon nurseries inform systems approaches to disease management

Phytopathology, 2014-10, Vol.104 (10), p.1052-1062

2014

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Phytophthora ramorum: a pathogen with a remarkably wide host range causing sudden oak death on oaks and ramorum blight on woody ornamentals

Molecular plant pathology, 2008-11, Vol.9 (6), p.729-740

2008

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Fungicide Sensitivity of U.S. Genotypes of Phytophthora infestans to Six Oomycete-Targeted Compounds

Plant disease, 2015-05, Vol.99 (5), p.659-666

2015

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Genotyping-by-Sequencing Reveals Fine-Scale Differentiation in Populations of Pseudoperonospora humuli

Phytopathology, 2019-10, Vol.109 (10), p.1801-1810

2019

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Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management

eLife, 2017-12, Vol.6

2017

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Comparative Genomic Analysis of 31 Phytophthora Genomes Reveals Genome Plasticity and Horizontal Gene Transfer

Molecular plant-microbe interactions, 2023-01, Vol.36 (1), p.26-46

2023

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Population genetic structure and cryptic species of Plasmopara viticola in Australia

Phytopathology, 2019-11, Vol.109 (11), p.1975-1983

2019

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Metacoder: An R package for visualization and manipulation of community taxonomic diversity data

vcfr: a package to manipulate and visualize variant call format data in R

Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality

effectR : An Expandable R Package to Predict Candidate RxLR and CRN Effectors in Oomycetes Using Motif Searches

Population Genomics of Fungal and Oomycete Pathogens

Ecology and Evolution of the Sudden Oak Death Pathogen Phytophthora ramorum

Insights into evolving global populations of Phytophthora infestans via new complementary mtDNA haplotype markers and nuclear SSRs

Phylogeographic Approaches to Characterize the Emergence of Plant Pathogens

Diversification of plasmids in a genus of pathogenic and nitrogen-fixing bacteria

Host-induced aneuploidy and phenotypic diversification in the Sudden Oak Death pathogen Phytophthora ramorum

Irish potato famine pathogen Phytophthora infestans originated in central Mexico rather than the Andes

High-Quality, Phased Genomes of Phytophthora ramorum Clonal Lineages NA1 and EU1

Are traded forest tree seeds a potential source of nonnative pests?

Plant Pathogen Phytophthora andina Emerged via Hybridization of an Unknown Phytophthora Species and the Irish Potato Famine Pathogen, P. infestans

Stable predictive markers for Phytophthora sojae avirulence genes that impair infection of soybean uncovered by whole genome sequencing of 31 isolates

Fungal Evolution in Anthropogenic Environments: Botrytis cinerea Populations Infecting Small Fruit Hosts in the Pacific Northwest Rapidly Adapt to Human-Induced Selection Pressures

Population Genetic Analysis Infers Migration Pathways of Phytophthora ramorum in US Nurseries

Risk of Epidemic Development in Nurseries from Soil Inoculum of Phytophthora ramorum

Phytophthora community structure analyses in Oregon nurseries inform systems approaches to disease management

Phytophthora ramorum: a pathogen with a remarkably wide host range causing sudden oak death on oaks and ramorum blight on woody ornamentals

Fungicide Sensitivity of U.S. Genotypes of Phytophthora infestans to Six Oomycete-Targeted Compounds

Genotyping-by-Sequencing Reveals Fine-Scale Differentiation in Populations of Pseudoperonospora humuli

Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management

Comparative Genomic Analysis of 31 Phytophthora Genomes Reveals Genome Plasticity and Horizontal Gene Transfer

Population genetic structure and cryptic species of Plasmopara viticola in Australia

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