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Is it time to change the reference genome?

Genome Biology, 2019-08, Vol.20 (1), p.159-159, Article 159

2019

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Co-expression of calcium and hERG potassium channels reduces the incidence of proarrhythmic events

Cardiovascular research, 2021-08, Vol.117 (10), p.2216-2227

2021

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Spatial coherence and stationarity of local field potentials in an isolated whole hippocampal preparation in vitro

Journal of computational neuroscience, 2010-12, Vol.29 (3), p.521-532

2010

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Characterizing in vitro hippocampal ripples using time–frequency analysis

Neurocomputing (Amsterdam), 2005-06, Vol.65, p.357-364

2005

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Modelling the spatiotemporal pattern of synaptic inputs in hippocampal neurons during population rhythms

Gillis, Jesse A

2007

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ProQuest

Deconstructing hippocampal EEG rhythms using time-frequency analysis

Gillis, Jesse A

2003

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ProQuest

Defining the extent of gene function using ROC curvature

Bioinformatics (Oxford, England), 2022-12, Vol.38 (24), p.5390-5397

2022

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Co-expression in Single-Cell Analysis: Saving Grace or Original Sin?

Trends in genetics, 2018-11, Vol.34 (11), p.823-831

2018

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Revealing the structure of pharmacobehavioral space through motion sequencing

Nature neuroscience, 2020-11, Vol.23 (11), p.1433

2020

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"Guilt by association" is the exception rather than the rule in gene networks

PLoS computational biology, 2012-03, Vol.8 (3), p.e1002444-e1002444

2012

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Predictability of human differential gene expression

Proceedings of the National Academy of Sciences - PNAS, 2019-03, Vol.116 (13), p.6491-6500

2019

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Single cell RNA-sequencing: replicability of cell types

Current opinion in neurobiology, 2019-06, Vol.56, p.69-77

2019

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The impact of multifunctional genes on "guilt by association" analysis

PloS one, 2011-02, Vol.6 (2), p.e17258-e17258

2011

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Transcriptional Architecture of Synaptic Communication Delineates GABAergic Neuron Identity

Cell, 2017-10, Vol.171 (3), p.522-539.e20

2017

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EGAD: ultra-fast functional analysis of gene networks

Bioinformatics (Oxford, England), 2017-02, Vol.33 (4), p.612-614

2017

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Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor

Nature communications, 2018-02, Vol.9 (1), p.884-12, Article 884

2018

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A global high-density chromatin interaction network reveals functional long-range and trans-chromosomal relationships

Genome Biology, 2022-11, Vol.23 (1), p.238-238, Article 238

2022

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Assessing identity, redundancy and confounds in Gene Ontology annotations over time

Bioinformatics, 2013-02, Vol.29 (4), p.476-482

2013

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The role of indirect connections in gene networks in predicting function

Bioinformatics, 2011-07, Vol.27 (13), p.1860-1866

2011

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High-Throughput Mapping of Long-Range Neuronal Projection Using In Situ Sequencing

Cell, 2019-10, Vol.179 (3), p.772-786.e19

2019

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Ligand Similarity Complements Sequence, Physical Interaction, and Co-Expression for Gene Function Prediction

PloS one, 2016-07, Vol.11 (7), p.e0160098-e0160098

2016

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INTERPRETING GENE NETWORKS FOR SCHIZOPHRENIA RESEARCH: BIASES, HEURISTICS, AND CONTROLS

Schizophrenia research, 2014-04, Vol.153, p.S73-S73

Gillis, Jesse

2014

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Characterizing the state of the art in the computational assignment of gene function: lessons from the first critical assessment of functional annotation (CAFA)

BMC bioinformatics, 2013-04, Vol.14 Suppl 3 (Suppl 3), p.S15-S15, Article S15

2013

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Genome-wide expression profiling of schizophrenia using a large combined cohort

Molecular psychiatry, 2013-02, Vol.18 (2), p.215-225

2013

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Coexpression reveals conserved gene programs that co-vary with cell type across kingdoms

Nucleic acids research, 2022-05, Vol.50 (8), p.4302

2022

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Is it time to change the reference genome?

Co-expression of calcium and hERG potassium channels reduces the incidence of proarrhythmic events

Spatial coherence and stationarity of local field potentials in an isolated whole hippocampal preparation in vitro

Characterizing in vitro hippocampal ripples using time–frequency analysis

Modelling the spatiotemporal pattern of synaptic inputs in hippocampal neurons during population rhythms

Deconstructing hippocampal EEG rhythms using time-frequency analysis

Defining the extent of gene function using ROC curvature

Co-expression in Single-Cell Analysis: Saving Grace or Original Sin?

Revealing the structure of pharmacobehavioral space through motion sequencing

"Guilt by association" is the exception rather than the rule in gene networks

Predictability of human differential gene expression

Single cell RNA-sequencing: replicability of cell types

The impact of multifunctional genes on "guilt by association" analysis

Transcriptional Architecture of Synaptic Communication Delineates GABAergic Neuron Identity

EGAD: ultra-fast functional analysis of gene networks

Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor

A global high-density chromatin interaction network reveals functional long-range and trans-chromosomal relationships

Assessing identity, redundancy and confounds in Gene Ontology annotations over time

The role of indirect connections in gene networks in predicting function

High-Throughput Mapping of Long-Range Neuronal Projection Using In Situ Sequencing

Ligand Similarity Complements Sequence, Physical Interaction, and Co-Expression for Gene Function Prediction

INTERPRETING GENE NETWORKS FOR SCHIZOPHRENIA RESEARCH: BIASES, HEURISTICS, AND CONTROLS

Characterizing the state of the art in the computational assignment of gene function: lessons from the first critical assessment of functional annotation (CAFA)

Genome-wide expression profiling of schizophrenia using a large combined cohort

Coexpression reveals conserved gene programs that co-vary with cell type across kingdoms

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