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SCnorm: robust normalization of single-cell RNA-seq data

Nature methods, 2017-06, Vol.14 (6), p.584

2017

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Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress

PLoS biology, 2017-12, Vol.15 (12), p.e2004050-e2004050

2017

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Comparative genomics of the environmental stress response in ascomycete fungi

Yeast (Chichester, England), 2007-11, Vol.24 (11), p.961-976

Gasch, Audrey P

2007

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PKA regulatory subunit Bcy1 couples growth, lipid metabolism, and fermentation during anaerobic xylose growth in Saccharomyces cerevisiae

PLoS genetics, 2023-07, Vol.19 (7), p.e1010593-e1010593

2023

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Stress-activated genomic expression changes serve a preparative role for impending stress in yeast

Molecular biology of the cell, 2008-11, Vol.19 (11), p.4580-4587

2008

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Integrative annotation scores of variants for impact on RNA binding protein activities

Bioinformatics (Oxford, England), 2024-03, Vol.40 (4)

2024

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Genome-wide association across Saccharomyces cerevisiae strains reveals substantial variation in underlying gene requirements for toxin tolerance

PLoS genetics, 2018-02, Vol.14 (2), p.e1007217-e1007217

2018

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Exploiting the yeast stress-activated signaling network to inform on stress biology and disease signaling

Current genetics, 2015-11, Vol.61 (4), p.503-511

2015

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Multiple means to the same end: the genetic basis of acquired stress resistance in yeast

PLoS genetics, 2011-11, Vol.7 (11), p.e1002353

2011

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The role of stress-activated RNA-protein granules in surviving adversity

RNA (Cambridge), 2021-07, Vol.27 (7), p.753-762

2021

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Variations in stress sensitivity and genomic expression in diverse S. cerevisiae isolates

PLoS genetics, 2008-10, Vol.4 (10), p.e1000223-e1000223

2008

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Integrated module and gene-specific regulatory inference implicates upstream signaling networks

PLoS computational biology, 2013-10, Vol.9 (10), p.e1003252-e1003252

2013

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Rewired cellular signaling coordinates sugar and hypoxic responses for anaerobic xylose fermentation in yeast

PLoS genetics, 2019-03, Vol.15 (3), p.e1008037-e1008037

2019

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Decoupling Yeast Cell Division and Stress Defense Implicates mRNA Repression in Translational Reallocation during Stress

Current biology, 2018-08, Vol.28 (16), p.2673-2680.e4

2018

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The Power of Natural Variation for Model Organism Biology

Trends in genetics, 2016-03, Vol.32 (3), p.147-154

2016

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Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering

Genome biology, 2002-10, Vol.3 (11), p.RESEARCH0059-RESEARCH0059, Article research0059.1

2002

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Phosphoproteome Response to Dithiothreitol Reveals Unique Versus Shared Features of Saccharomyces cerevisiae Stress Responses

Journal of proteome research, 2020-08, Vol.19 (8), p.3405-3417

2020

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Genetic variation in aneuploidy prevalence and tolerance across Saccharomyces cerevisiae lineages

Genetics (Austin), 2021-04, Vol.217 (4)

2021

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Dosage compensation can buffer copy-number variation in wild yeast

eLife, 2015-05, Vol.4

2015

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PKA and HOG signaling contribute separable roles to anaerobic xylose fermentation in yeast engineered for biofuel production

PloS one, 2019-05, Vol.14 (5), p.e0212389-e0212389

2019

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A dynamic model of proteome changes reveals new roles for transcript alteration in yeast

Molecular systems biology, 2011, Vol.7 (1), p.514-n/a

2011

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Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response

PLoS computational biology, 2018-05, Vol.13 (5), p.e1006088-e1006088

2018

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Genetic background effects in quantitative genetics: gene-by-system interactions

Current genetics, 2018-12, Vol.64 (6), p.1173-1176

2018

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Natural variation in the consequences of gene overexpression and its implications for evolutionary trajectories

eLife, 2021-08, Vol.10

2021

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The genetic basis of aneuploidy tolerance in wild yeast

eLife, 2020-01, Vol.9

2020

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SCnorm: robust normalization of single-cell RNA-seq data

Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress

Comparative genomics of the environmental stress response in ascomycete fungi

PKA regulatory subunit Bcy1 couples growth, lipid metabolism, and fermentation during anaerobic xylose growth in Saccharomyces cerevisiae

Stress-activated genomic expression changes serve a preparative role for impending stress in yeast

Integrative annotation scores of variants for impact on RNA binding protein activities

Genome-wide association across Saccharomyces cerevisiae strains reveals substantial variation in underlying gene requirements for toxin tolerance

Exploiting the yeast stress-activated signaling network to inform on stress biology and disease signaling

Multiple means to the same end: the genetic basis of acquired stress resistance in yeast

The role of stress-activated RNA-protein granules in surviving adversity

Variations in stress sensitivity and genomic expression in diverse S. cerevisiae isolates

Integrated module and gene-specific regulatory inference implicates upstream signaling networks

Rewired cellular signaling coordinates sugar and hypoxic responses for anaerobic xylose fermentation in yeast

Decoupling Yeast Cell Division and Stress Defense Implicates mRNA Repression in Translational Reallocation during Stress

The Power of Natural Variation for Model Organism Biology

Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering

Phosphoproteome Response to Dithiothreitol Reveals Unique Versus Shared Features of Saccharomyces cerevisiae Stress Responses

Genetic variation in aneuploidy prevalence and tolerance across Saccharomyces cerevisiae lineages

Dosage compensation can buffer copy-number variation in wild yeast

PKA and HOG signaling contribute separable roles to anaerobic xylose fermentation in yeast engineered for biofuel production

A dynamic model of proteome changes reveals new roles for transcript alteration in yeast

Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response

Genetic background effects in quantitative genetics: gene-by-system interactions

Natural variation in the consequences of gene overexpression and its implications for evolutionary trajectories

The genetic basis of aneuploidy tolerance in wild yeast

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