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A statistical approach for identifying differential distributions in single-cell RNA-seq experiments

Genome Biology, 2016-10, Vol.17 (1), p.222-222, Article 222

2016

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Machine Learning Consensus Scoring Improves Performance Across Targets in Structure-Based Virtual Screening

Journal of chemical information and modeling, 2017-07, Vol.57 (7), p.1579-1590

2017

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Molecular transitions from papillomavirus infection to cervical precancer and cancer: Role of stromal estrogen receptor signaling

Proceedings of the National Academy of Sciences - PNAS, 2015-06, Vol.112 (25), p.E3255-E3264

2015

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Drosophila RNAi screen identifies host genes important for influenza virus replication

Nature (London), 2008-08, Vol.454 (7206), p.890-893

2008

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SpotClean adjusts for spot swapping in spatial transcriptomics data

Nature communications, 2022-05, Vol.13 (1), p.2971-2971, Article 2971

2022

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Dosage compensation can buffer copy-number variation in wild yeast

eLife, 2015-05, Vol.4

2015

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Role of dual specificity phosphatases (DUSPs) in melanoma cellular plasticity and drug resistance

Scientific reports, 2022-08, Vol.12 (1), p.14395-14395, Article 14395

2022

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MicroRNA 29c is down-regulated in nasopharyngeal carcinomas, up-regulating mRNAs encoding extracellular matrix proteins

Proceedings of the National Academy of Sciences - PNAS, 2008-04, Vol.105 (15), p.5874-5878

2008

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Fundamental differences in cell cycle deregulation in human papillomavirus-positive and human papillomavirus-negative head/neck and cervical cancers

Cancer research (Chicago, Ill.), 2007-05, Vol.67 (10), p.4605-4619

2007

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Disordered Antigens and Epitope Overlap Between Anti–Citrullinated Protein Antibodies and Rheumatoid Factor in Rheumatoid Arthritis

Arthritis & rheumatology (Hoboken, N.J.), 2020-02, Vol.72 (2), p.262-272

2020

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A conserved transcriptional signature of delayed aging and reduced disease vulnerability is partially mediated by SIRT3

PloS one, 2015-04, Vol.10 (4), p.e0120738-e0120738

2015

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High-resolution human genome structure by single-molecule analysis

Proceedings of the National Academy of Sciences - PNAS, 2010-06, Vol.107 (24), p.10848-10853

2010

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Systematic identification of novel, essential host genes affecting bromovirus RNA replication

PloS one, 2011-08, Vol.6 (8), p.e23988-e23988

2011

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Limited agreement of independent RNAi screens for virus-required host genes owes more to false-negative than false-positive factors

PLoS computational biology, 2013-09, Vol.9 (9), p.e1003235-e1003235

2013

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Predicting kinase inhibitors using bioactivity matrix derived informer sets

PLoS computational biology, 2019-08, Vol.15 (8), p.e1006813-e1006813

2019

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Notch Signaling Suppresses Melanoma Tumor Development in BRAF/Pten Mice

Cancers, 2023-01, Vol.15 (2), p.519

2023

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The conserved protective cyclic AMP-phosphodiesterase function PDE4B is expressed in the adenoma and adjacent normal colonic epithelium of mammals and silenced in colorectal cancer

PLoS genetics, 2018-09, Vol.14 (9), p.e1007611

2018

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Single-molecule analysis reveals widespread structural variation in multiple myeloma

Proceedings of the National Academy of Sciences - PNAS, 2015-06, Vol.112 (25), p.7689-7694

2015

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Further support for aneuploidy tolerance in wild yeast and effects of dosage compensation on gene copy-number evolution

eLife, 2016-03, Vol.5, p.e14409-e14409

2016

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NK cells propagate T cell immunity following in situ tumor vaccination

Cell reports (Cambridge), 2023-12, Vol.42 (12), p.113556-113556, Article 113556

2023

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Chromosomal copy number alterations and HPV integration in cervical precancer and invasive cancer

Carcinogenesis (New York), 2016-02, Vol.37 (2), p.188-196

2016

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Random-Set Methods Identify Distinct Aspects of the Enrichment Signal in Gene-Set Analysis

The annals of applied statistics, 2007-06, Vol.1 (1), p.85-106

2007

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Melanoma Progression Inhibits Pluripotency and Differentiation of Melanoma-Derived iPSCs Produces Cells with Neural-like Mixed Dysplastic Phenotype

Stem cell reports, 2019-07, Vol.13 (1), p.177-192

2019

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Bayesian Phylogenetic Inference via Markov Chain Monte Carlo Methods

Biometrics, 1999-03, Vol.55 (1), p.1-12

1999

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Antibody profiling of patients with prostate cancer reveals differences in antibody signatures among disease stages

Journal for immunotherapy of cancer, 2020-12, Vol.8 (2), p.e001510

2020

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A statistical approach for identifying differential distributions in single-cell RNA-seq experiments

Machine Learning Consensus Scoring Improves Performance Across Targets in Structure-Based Virtual Screening

Molecular transitions from papillomavirus infection to cervical precancer and cancer: Role of stromal estrogen receptor signaling

Drosophila RNAi screen identifies host genes important for influenza virus replication

SpotClean adjusts for spot swapping in spatial transcriptomics data

Dosage compensation can buffer copy-number variation in wild yeast

Role of dual specificity phosphatases (DUSPs) in melanoma cellular plasticity and drug resistance

MicroRNA 29c is down-regulated in nasopharyngeal carcinomas, up-regulating mRNAs encoding extracellular matrix proteins

Fundamental differences in cell cycle deregulation in human papillomavirus-positive and human papillomavirus-negative head/neck and cervical cancers

Disordered Antigens and Epitope Overlap Between Anti–Citrullinated Protein Antibodies and Rheumatoid Factor in Rheumatoid Arthritis

A conserved transcriptional signature of delayed aging and reduced disease vulnerability is partially mediated by SIRT3

High-resolution human genome structure by single-molecule analysis

Systematic identification of novel, essential host genes affecting bromovirus RNA replication

Limited agreement of independent RNAi screens for virus-required host genes owes more to false-negative than false-positive factors

Predicting kinase inhibitors using bioactivity matrix derived informer sets

Notch Signaling Suppresses Melanoma Tumor Development in BRAF/Pten Mice

The conserved protective cyclic AMP-phosphodiesterase function PDE4B is expressed in the adenoma and adjacent normal colonic epithelium of mammals and silenced in colorectal cancer

Single-molecule analysis reveals widespread structural variation in multiple myeloma

Further support for aneuploidy tolerance in wild yeast and effects of dosage compensation on gene copy-number evolution

NK cells propagate T cell immunity following in situ tumor vaccination

Chromosomal copy number alterations and HPV integration in cervical precancer and invasive cancer

Random-Set Methods Identify Distinct Aspects of the Enrichment Signal in Gene-Set Analysis

Melanoma Progression Inhibits Pluripotency and Differentiation of Melanoma-Derived iPSCs Produces Cells with Neural-like Mixed Dysplastic Phenotype

Bayesian Phylogenetic Inference via Markov Chain Monte Carlo Methods

Antibody profiling of patients with prostate cancer reveals differences in antibody signatures among disease stages

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