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Linking pangenomes and metagenomes: the Prochlorococcus metapangenome

PeerJ (San Francisco, CA), 2018-01, Vol.6, p.e4320-e4320, Article e4320

2018

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Large-Scale Metagenomic-Based Study of Antibiotic Resistance in the Environment

Current biology, 2014-05, Vol.24 (10), p.1096-1100

2014

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VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses

Microbiome, 2021-02, Vol.9 (1), p.37-37, Article 37

2021

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DESMAN: a new tool for de novo extraction of strains from metagenomes

Genome Biology, 2017-09, Vol.18 (1), p.181-181, Article 181

2017

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Giant Viruses Encode Actin-Related Proteins

Molecular biology and evolution, 2022-02, Vol.39 (2)

2022

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Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome

Genome Biology, 2020-12, Vol.21 (1), p.292-35, Article 292

2020

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Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes

Nature microbiology, 2018-07, Vol.3 (7), p.804-813

2018

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Phytoplankton–bacterial interactions mediate micronutrient colimitation at the coastal Antarctic sea ice edge

Proceedings of the National Academy of Sciences - PNAS, 2015-08, Vol.112 (32), p.9938-9943

2015

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Accessing the Soil Metagenome for Studies of Microbial Diversity

Applied and Environmental Microbiology, 2011-02, Vol.77 (4), p.1315-1324

2011

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Peripartum Antibiotics Promote Gut Dysbiosis, Loss of Immune Tolerance, and Inflammatory Bowel Disease in Genetically Prone Offspring

Cell reports (Cambridge), 2017-07, Vol.20 (2), p.491-504

2017

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Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade

eLife, 2019-09, Vol.8

2019

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The defensome of complex bacterial communities

Nature communications, 2024-03, Vol.15 (1), p.2146-2146, Article 2146

2024

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Identifying contamination with advanced visualization and analysis practices: metagenomic approaches for eukaryotic genome assemblies

PeerJ (San Francisco, CA), 2016-03, Vol.4, p.e1839-e1839, Article e1839

2016

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Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents

Nature communications, 2017-10, Vol.8 (1), p.1114-11, Article 1114

2017

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Discovery of nondiazotrophic Trichodesmium species abundant and widespread in the open ocean

Proceedings of the National Academy of Sciences - PNAS, 2021-11, Vol.118 (46), p.1-10

Delmont, Tom O.

2021

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Unifying the known and unknown microbial coding sequence space

eLife, 2022-03, Vol.11

2022

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Structure, fluctuation and magnitude of a natural grassland soil metagenome

The ISME Journal, 2012-09, Vol.6 (9), p.1677-1687

2012

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Discovery of Viral Myosin Genes With Complex Evolutionary History Within Plankton

Frontiers in microbiology, 2021-06, Vol.12, p.683294-683294

2021

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Genomic adaptation of giant viruses in polar oceans

Nature communications, 2023-10, Vol.14 (1), p.6233-6233, Article 6233

2023

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Metagenomic Signatures of Bacterial Adaptation to Life in the Phyllosphere of a Salt-Secreting Desert Tree

Applied and environmental microbiology, 2016-05, Vol.82 (9), p.2854-2861

2016

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Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts

Communications biology, 2021-05, Vol.4 (1), p.579-579, Article 579

2021

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Metagenomic comparison of direct and indirect soil DNA extraction approaches

Journal of microbiological methods, 2011-09, Vol.86 (3), p.397-400

2011

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Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics

Frontiers in microbiology, 2015-04, Vol.6, p.358-358

2015

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Tracing the invertebrate herpesviruses in the global sequence datasets

Frontiers in Marine Science, 2023-07, Vol.10

2023

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Linking pangenomes and metagenomes: the Prochlorococcus metapangenome

Large-Scale Metagenomic-Based Study of Antibiotic Resistance in the Environment

VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses

Biosynthetic potential of the global ocean microbiome

DESMAN: a new tool for de novo extraction of strains from metagenomes

Giant Viruses Encode Actin-Related Proteins

Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome

Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes

Phytoplankton–bacterial interactions mediate micronutrient colimitation at the coastal Antarctic sea ice edge

Accessing the Soil Metagenome for Studies of Microbial Diversity

Peripartum Antibiotics Promote Gut Dysbiosis, Loss of Immune Tolerance, and Inflammatory Bowel Disease in Genetically Prone Offspring

Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade

The defensome of complex bacterial communities

Identifying contamination with advanced visualization and analysis practices: metagenomic approaches for eukaryotic genome assemblies

Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents

Discovery of nondiazotrophic Trichodesmium species abundant and widespread in the open ocean

Unifying the known and unknown microbial coding sequence space

Structure, fluctuation and magnitude of a natural grassland soil metagenome

Discovery of Viral Myosin Genes With Complex Evolutionary History Within Plankton

Genomic adaptation of giant viruses in polar oceans

Metagenomic Signatures of Bacterial Adaptation to Life in the Phyllosphere of a Salt-Secreting Desert Tree

Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts

Metagenomic comparison of direct and indirect soil DNA extraction approaches

Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics

Tracing the invertebrate herpesviruses in the global sequence datasets

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