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Specific identification and quantification of circular RNAs from sequencing data

Bioinformatics, 2016-04, Vol.32 (7), p.1094-1096

2016

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Flexbar 3.0 - SIMD and multicore parallelization

Bioinformatics (Oxford, England), 2017-09, Vol.33 (18), p.2941-2942

2017

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Computational approaches for circular RNA analysis

Wiley interdisciplinary reviews. RNA, 2019-05, Vol.10 (3), p.e1528-n/a

2019

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SMG5-SMG7 authorize nonsense-mediated mRNA decay by enabling SMG6 endonucleolytic activity

Nature communications, 2021-06, Vol.12 (1), p.3965-3965, Article 3965

2021

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Mechanical regulation of transcription controls Polycomb-mediated gene silencing during lineage commitment

Nature cell biology, 2016-08, Vol.18 (8), p.864

2016

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Single-cell transcriptomics defines heterogeneity of epicardial cells and fibroblasts within the infarcted murine heart

eLife, 2021-06, Vol.10

2021

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Analysis of Intron Sequences Reveals Hallmarks of Circular RNA Biogenesis in Animals

Cell reports (Cambridge), 2015-01, Vol.10 (2), p.170-177

2015

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The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts

Molecular cell, 2012-06, Vol.46 (5), p.674-690

2012

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RNA modification mapping with JACUSA2

Genome Biology, 2022-05, Vol.23 (1), p.115-115, Article 115

2022

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FLEXBAR-Flexible Barcode and Adapter Processing for Next-Generation Sequencing Platforms

Biology (Basel, Switzerland), 2012-12, Vol.1 (3), p.895-905

2012

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MOV10 Is a 5′ to 3′ RNA Helicase Contributing to UPF1 mRNA Target Degradation by Translocation along 3′ UTRs

Molecular cell, 2014-05, Vol.54 (4), p.573-585

2014

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Mitofusin 2 is required to maintain mitochondrial coenzyme Q levels

The Journal of cell biology, 2015-02, Vol.208 (4), p.429-442

2015

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A secreted microRNA disrupts autophagy in distinct tissues of Caenorhabditis elegans upon ageing

Nature communications, 2019-10, Vol.10 (1), p.4827-14, Article 4827

2019

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Profiling and Validation of the Circular RNA Repertoire in Adult Murine Hearts

Genomics, proteomics & bioinformatics, 2016-08, Vol.14 (4), p.216-223

2016

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A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain

Nature communications, 2021-01, Vol.12 (1), p.463-463, Article 463

2021

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ATF6 Regulates Cardiac Hypertrophy by Transcriptional Induction of the mTORC1 Activator, Rheb

Circulation research, 2019-01, Vol.124 (1), p.79-93

2019

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RN7SK small nuclear RNA controls bidirectional transcription of highly expressed gene pairs in skin

Nature communications, 2021-10, Vol.12 (1), p.5864-5864, Article 5864

2021

Volltextzugriff (PDF)

Increased susceptibility of human endothelial cells to infections by SARS-CoV-2 variants

Basic research in cardiology, 2021-07, Vol.116 (1), p.42-42, Article 42

2021

Volltextzugriff (PDF)

ADAR-deficiency perturbs the global splicing landscape in mouse tissues

Genome research, 2020-08, Vol.30 (8), p.1107

2020

Volltextzugriff (PDF)

MicroRNA-138 controls hippocampal interneuron function and short-term memory in mice

eLife, 2022-03, Vol.11

2022

Volltextzugriff (PDF)

doRiNA: a database of RNA interactions in post-transcriptional regulation

Nucleic acids research, 2012-01, Vol.40 (Database issue), p.D180

2012

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Integrin-linked kinase regulates the niche of quiescent epidermal stem cells

Nature communications, 2015-09, Vol.6 (1), p.8198, Article 8198

2015

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Disorder and residual helicity alter p53-Mdm2 binding affinity and signaling in cells

Nature chemical biology, 2014-12, Vol.10 (12), p.1000

2014

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The genome of Eimeria falciformis--reduction and specialization in a single host apicomplexan parasite

BMC genomics, 2014-08, Vol.15 (1), p.696, Article 696

2014

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MePMe-seq: antibody-free simultaneous m6A and m5C mapping in mRNA by metabolic propargyl labeling and sequencing

Nature communications, 2023-11, Vol.14 (1), p.7154-7154, Article 7154

2023

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Specific identification and quantification of circular RNAs from sequencing data

Flexbar 3.0 - SIMD and multicore parallelization

Computational approaches for circular RNA analysis

SMG5-SMG7 authorize nonsense-mediated mRNA decay by enabling SMG6 endonucleolytic activity

Mechanical regulation of transcription controls Polycomb-mediated gene silencing during lineage commitment

Single-cell transcriptomics defines heterogeneity of epicardial cells and fibroblasts within the infarcted murine heart

Analysis of Intron Sequences Reveals Hallmarks of Circular RNA Biogenesis in Animals

The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts

RNA modification mapping with JACUSA2

FLEXBAR-Flexible Barcode and Adapter Processing for Next-Generation Sequencing Platforms

MOV10 Is a 5′ to 3′ RNA Helicase Contributing to UPF1 mRNA Target Degradation by Translocation along 3′ UTRs

Mitofusin 2 is required to maintain mitochondrial coenzyme Q levels

A secreted microRNA disrupts autophagy in distinct tissues of Caenorhabditis elegans upon ageing

Profiling and Validation of the Circular RNA Repertoire in Adult Murine Hearts

A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain

ATF6 Regulates Cardiac Hypertrophy by Transcriptional Induction of the mTORC1 Activator, Rheb

RN7SK small nuclear RNA controls bidirectional transcription of highly expressed gene pairs in skin

Increased susceptibility of human endothelial cells to infections by SARS-CoV-2 variants

ADAR-deficiency perturbs the global splicing landscape in mouse tissues

MicroRNA-138 controls hippocampal interneuron function and short-term memory in mice

doRiNA: a database of RNA interactions in post-transcriptional regulation

Integrin-linked kinase regulates the niche of quiescent epidermal stem cells

Disorder and residual helicity alter p53-Mdm2 binding affinity and signaling in cells

The genome of Eimeria falciformis--reduction and specialization in a single host apicomplexan parasite

MePMe-seq: antibody-free simultaneous m6A and m5C mapping in mRNA by metabolic propargyl labeling and sequencing

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