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GC-content normalization for RNA-Seq data

BMC bioinformatics, 2011-12, Vol.12 (1), p.480-480, Article 480

2011

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A general and flexible method for signal extraction from single-cell RNA-seq data

Nature communications, 2018-01, Vol.9 (1), p.284-17, Article 284

2018

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Normalization of RNA-seq data using factor analysis of control genes or samples

Nature biotechnology, 2014-09, Vol.32 (9), p.896-902

2014

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Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics

BMC genomics, 2018-06, Vol.19 (1), p.477-477, Article 477

2018

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Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data

Genome Biology, 2020-08, Vol.21 (1), p.191-191, Article 191

2020

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Rapid non-uniform adaptation to conformation-specific KRAS(G12C) inhibition

Nature (London), 2020-01, Vol.577 (7790), p.421-425

2020

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A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain

Nature communications, 2021-01, Vol.12 (1), p.463-463, Article 463

2021

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Orchestrating single-cell analysis with Bioconductor

Nature methods, 2020-02, Vol.17 (2), p.137

2020

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Genetic Variation in the TAS2R38 Bitter Taste Receptor and Smoking Behaviors

PloS one, 2016-10, Vol.11 (10), p.e0164157

2016

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Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications

Genome Biology, 2018-02, Vol.19 (1), p.24-24, Article 24

2018

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Complementary networks of cortical somatostatin interneurons enforce layer specific control

eLife, 2019-03, Vol.8

2019

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Shank3 modulates sleep and expression of circadian transcription factors

eLife, 2019-04, Vol.8

2019

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Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution

Cell stem cell, 2017-06, Vol.20 (6), p.817-830.e8

2017

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A mouse-specific retrotransposon drives a conserved Cdk2ap1 isoform essential for development

Cell, 2021-10, Vol.184 (22), p.5541-5558.e22

2021

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mbkmeans: Fast clustering for single cell data using mini-batch k-means

PLoS computational biology, 2021-01, Vol.17 (1), p.e1008625-e1008625

2021

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A bio-cultural approach to the study of food choice: The contribution of taste genetics, population and culture

Appetite, 2017-07, Vol.114, p.240-247

2017

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Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq

Cell systems, 2019-04, Vol.8 (4), p.315-328.e8

2019

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Presence of cholesterol oxides in milk chocolates and their correlation with milk powder freshness

PloS one, 2022-03, Vol.17 (3), p.e0264288-e0264288

2022

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Effect of packaging in preventing cholesterol autoxidation in milk chocolates for a higher quality and safer shelf-life

PloS one, 2023-04, Vol.18 (4), p.e0284691-e0284691

2023

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clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets

PLoS computational biology, 2018-09, Vol.14 (9), p.e1006378-e1006378

2018

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Oxysterols: From redox bench to industry

Redox biology, 2022-02, Vol.49, p.102220-102220, Article 102220

2022

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Age-Dependent Prebiotic Effects of Soluble Corn Fiber in M-SHIME® Gut Microbial Ecosystems

Plant foods for human nutrition (Dordrecht), 2023-03, Vol.78 (1), p.213-220

2023

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Publisher Correction: A general and flexible method for signal extraction from single-cell RNA-seq data

Nature communications, 2019-02, Vol.10 (1), p.646-646, Article 646

2019

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Receiver operating characteristic estimation and threshold selection criteria in three-class classification problems for clustered data

Statistical methods in medical research, 2022-07, Vol.31 (7), p.1325-1341

2022

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GC-content normalization for RNA-Seq data

A general and flexible method for signal extraction from single-cell RNA-seq data

Normalization of RNA-seq data using factor analysis of control genes or samples

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics

Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data

Rapid non-uniform adaptation to conformation-specific KRAS(G12C) inhibition

A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain

Orchestrating single-cell analysis with Bioconductor

Genetic Variation in the TAS2R38 Bitter Taste Receptor and Smoking Behaviors

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications

Complementary networks of cortical somatostatin interneurons enforce layer specific control

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

Shank3 modulates sleep and expression of circadian transcription factors

Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution

A mouse-specific retrotransposon drives a conserved Cdk2ap1 isoform essential for development

mbkmeans: Fast clustering for single cell data using mini-batch k-means

A bio-cultural approach to the study of food choice: The contribution of taste genetics, population and culture

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq

Presence of cholesterol oxides in milk chocolates and their correlation with milk powder freshness

Effect of packaging in preventing cholesterol autoxidation in milk chocolates for a higher quality and safer shelf-life

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets

Oxysterols: From redox bench to industry

Age-Dependent Prebiotic Effects of Soluble Corn Fiber in M-SHIME® Gut Microbial Ecosystems

Publisher Correction: A general and flexible method for signal extraction from single-cell RNA-seq data

Receiver operating characteristic estimation and threshold selection criteria in three-class classification problems for clustered data

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