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Protter: interactive protein feature visualization and integration with experimental proteomic data

Bioinformatics, 2014-03, Vol.30 (6), p.884-886

2014

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Explosive cell lysis as a mechanism for the biogenesis of bacterial membrane vesicles and biofilms

Nature communications, 2016-04, Vol.7 (1), p.11220-11220, Article 11220

2016

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Mercury (II) reduction and co-precipitation of metallic mercury on hydrous ferric oxide in contaminated groundwater

The Science of the total environment, 2016-01, Vol.539, p.36-44

2016

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Towards the characterization of the hidden world of small proteins in Staphylococcus aureus, a proteogenomics approach

PLoS genetics, 2021-06, Vol.17 (6), p.e1009585-e1009585

2021

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Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system

BMC microbiology, 2019-06, Vol.19 (1), p.143-18, Article 143

2019

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Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats

Nucleic acids research, 2018-09, Vol.46 (17), p.8953

2018

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Volatile Organic Compounds from Native Potato-associated Pseudomonas as Potential Anti-oomycete Agents

Frontiers in microbiology, 2015-11, Vol.6, p.1295-1295

2015

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Identification and functional characterization of N-terminally acetylated proteins in Drosophila melanogaster

PLoS biology, 2009-11, Vol.7 (11), p.e1000236-e1000236

2009

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A Practical Guide to Small Protein Discovery and Characterization Using Mass Spectrometry

Journal of bacteriology, 2022-01, Vol.204 (1), p.e0035321-e0035321

2022

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Generating and navigating proteome maps using mass spectrometry

Nature reviews. Molecular cell biology, 2010-11, Vol.11 (11), p.789

2010

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A Peptidomimetic Antibiotic Targets Outer Membrane Proteins and Disrupts Selectively the Outer Membrane in Escherichia coli

The Journal of biological chemistry, 2016-01, Vol.291 (4), p.1921-1932

2016

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Competition assays and physiological experiments of soil and phyllosphere yeasts identify Candida subhashii as a novel antagonist of filamentous fungi

BMC microbiology, 2017-01, Vol.17 (1), p.4, Article 4

2017

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Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes

PLoS biology, 2009-03, Vol.7 (3), p.e48-e1000048

2009

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Seasonal Dynamics of Glyphosate and AMPA in Lake Greifensee: Rapid Microbial Degradation in the Epilimnion During Summer

Environmental science & technology, 2018-04, Vol.52 (8), p.4641-4649

2018

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PeptideClassifier for protein inference and targeted quantitative proteomics

Nature biotechnology, 2010-07, Vol.28 (7), p.647-650

2010

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The AHL- and BDSF-dependent quorum sensing systems control specific and overlapping sets of genes in Burkholderia cenocepacia H111

PloS one, 2012-11, Vol.7 (11), p.e49966-e49966

2012

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The hemolymph proteome of fed and starved Drosophila larvae

PloS one, 2013-06, Vol.8 (6), p.e67208-e67208

2013

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Detection of Known and Novel Small Proteins in Pseudomonas stutzeri Using a Combination of Bottom-Up and Digest-Free Proteomics and Proteogenomics

Analytical chemistry (Washington), 2023-08, Vol.95 (32), p.11892-11900

2023

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Metabolomic Profiling of Bradyrhizobium diazoefficiens-Induced Root Nodules Reveals Both Host Plant-Specific and Developmental Signatures

International journal of molecular sciences, 2016-06, Vol.17 (6), p.815-815

2016

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Cis-2-dodecenoic acid receptor RpfR links quorum-sensing signal perception with regulation of virulence through cyclic dimeric guanosine monophosphate turnover

Proceedings of the National Academy of Sciences - PNAS, 2012-09, Vol.109 (38), p.15479-15484

2012

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Metabolomics and Transcriptomics Identify Multiple Downstream Targets of Paraburkholderia phymatum σ54 During Symbiosis with Phaseolus vulgaris

International journal of molecular sciences, 2018-04, Vol.19 (4), p.1049

2018

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Harnessing the Microbiomes of Suppressive Composts for Plant Protection: From Metagenomes to Beneficial Microorganisms and Reliable Diagnostics

Frontiers in microbiology, 2020-07, Vol.11, p.1810-1810

2020

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Differential Expression of Paraburkholderia phymatum Type VI Secretion Systems (T6SS) Suggests a Role of T6SS-b in Early Symbiotic Interaction

Frontiers in plant science, 2021-07, Vol.12, p.699590-699590

2021

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Linking Comparative Genomics of Nine Potato-Associated Pseudomonas Isolates With Their Differing Biocontrol Potential Against Late Blight

Frontiers in microbiology, 2020-04, Vol.11, p.857

2020

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Salt- and Osmo-Responsive Sensor Histidine Kinases Activate the Bradyrhizobium diazoefficiens General Stress Response to Initiate Functional Symbiosis

Molecular plant-microbe interactions, 2022-07, Vol.35 (7), p.604-615

2022

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Protter: interactive protein feature visualization and integration with experimental proteomic data

Explosive cell lysis as a mechanism for the biogenesis of bacterial membrane vesicles and biofilms

Mercury (II) reduction and co-precipitation of metallic mercury on hydrous ferric oxide in contaminated groundwater

Towards the characterization of the hidden world of small proteins in Staphylococcus aureus, a proteogenomics approach

Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system

Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats

Volatile Organic Compounds from Native Potato-associated Pseudomonas as Potential Anti-oomycete Agents

Identification and functional characterization of N-terminally acetylated proteins in Drosophila melanogaster

A Practical Guide to Small Protein Discovery and Characterization Using Mass Spectrometry

Generating and navigating proteome maps using mass spectrometry

A Peptidomimetic Antibiotic Targets Outer Membrane Proteins and Disrupts Selectively the Outer Membrane in Escherichia coli

Competition assays and physiological experiments of soil and phyllosphere yeasts identify Candida subhashii as a novel antagonist of filamentous fungi

Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes

Seasonal Dynamics of Glyphosate and AMPA in Lake Greifensee: Rapid Microbial Degradation in the Epilimnion During Summer

PeptideClassifier for protein inference and targeted quantitative proteomics

The AHL- and BDSF-dependent quorum sensing systems control specific and overlapping sets of genes in Burkholderia cenocepacia H111

The hemolymph proteome of fed and starved Drosophila larvae

Detection of Known and Novel Small Proteins in Pseudomonas stutzeri Using a Combination of Bottom-Up and Digest-Free Proteomics and Proteogenomics

Metabolomic Profiling of Bradyrhizobium diazoefficiens-Induced Root Nodules Reveals Both Host Plant-Specific and Developmental Signatures

Cis-2-dodecenoic acid receptor RpfR links quorum-sensing signal perception with regulation of virulence through cyclic dimeric guanosine monophosphate turnover

Metabolomics and Transcriptomics Identify Multiple Downstream Targets of Paraburkholderia phymatum σ54 During Symbiosis with Phaseolus vulgaris

Harnessing the Microbiomes of Suppressive Composts for Plant Protection: From Metagenomes to Beneficial Microorganisms and Reliable Diagnostics

Differential Expression of Paraburkholderia phymatum Type VI Secretion Systems (T6SS) Suggests a Role of T6SS-b in Early Symbiotic Interaction

Linking Comparative Genomics of Nine Potato-Associated Pseudomonas Isolates With Their Differing Biocontrol Potential Against Late Blight

Salt- and Osmo-Responsive Sensor Histidine Kinases Activate the Bradyrhizobium diazoefficiens General Stress Response to Initiate Functional Symbiosis

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