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Identifying protein subcellular localisation in scientific literature using bidirectional deep recurrent neural network

Scientific reports, 2021-01, Vol.11 (1), p.1696-1696, Article 1696

2021

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Hierarchical network analysis of co-occurring bioentities in literature

Scientific reports, 2022-05, Vol.12 (1), p.7885-7885, Article 7885

2022

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PALM-IST: Pathway Assembly from Literature Mining - an Information Search Tool

Scientific reports, 2015-05, Vol.5 (1), p.10021-10021, Article 10021

2015

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Dataset from a human-in-the-loop approach to identify functionally important protein residues from literature

Scientific data, 2024-09, Vol.11 (1), p.1032-18, Article 1032

2024

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A collection of cannabinoid-related negative findings from autaptic hippocampal neurons

Scientific reports, 2023-06, Vol.13 (1), p.9610-9610, Article 9610

2023

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Impact of structural biology and the protein data bank on us fda new drug approvals of low molecular weight antineoplastic agents 2019–2023

Oncogene, 2024-07, Vol.43 (29), p.2229-2243

2024

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Literature mining for the biologist: from information retrieval to biological discovery

Nature reviews. Genetics, 2006-02, Vol.7 (2), p.119-129

2006

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Defining tissue proteomes by systematic literature review

Scientific reports, 2018-01, Vol.8 (1), p.546-546, Article 546

2018

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dbPAF: an integrative database of protein phosphorylation in animals and fungi

Scientific reports, 2016-03, Vol.6 (1), p.23534-23534, Article 23534

2016

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CD-CODE: crowdsourcing condensate database and encyclopedia

Nature methods, 2023-05, Vol.20 (5), p.673-676

2023

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Compilation of parasitic immunogenic proteins from 30 years of published research using machine learning and natural language processing

Scientific reports, 2022-06, Vol.12 (1), p.10349-10349, Article 10349

2022

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Archaea — timeline of the third domain

Nature reviews. Microbiology, 2011-01, Vol.9 (1), p.51-61

Cavicchioli, Ricardo

2011

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CODA: Integrating multi-level context-oriented directed associations for analysis of drug effects

Scientific reports, 2017-08, Vol.7 (1), p.7519-12, Article 7519

2017

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High-dimensional single-cell analysis of human natural killer cell heterogeneity

Nature immunology, 2024-08, Vol.25 (8), p.1474-1488

2024

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A publication-wide association study (PWAS), historical language models to prioritise novel therapeutic drug targets

Scientific reports, 2023-05, Vol.13 (1), p.8366-8366, Article 8366

2023

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In vitro comparison of major memory-support dietary supplements for their effectiveness in reduction/inhibition of beta-amyloid protein fibrils and tau protein tangles: key primary targets for memory loss

Scientific reports, 2021-02, Vol.11 (1), p.3001-3001, Article 3001

2021

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Beyond protein lists: AI-assisted interpretation of proteomic investigations in the context of evolving scientific knowledge

Nature methods, 2024-08, Vol.21 (8), p.1387-1389

2024

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Imaging Drosophila gene activation and polymerase pausing in vivo

Nature, 2007-11, Vol.450 (7167), p.198-202

Lis, J.T

2007

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Mass spectrometry for the evaluation of monoclonal proteins in multiple myeloma and related disorders: an International Myeloma Working Group Mass Spectrometry Committee Report

Blood cancer journal (New York), 2021-02, Vol.11 (2), p.24-24, Article 24

2021

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Linking publication, gene and protein data

Nature cell biology, 2006-11, Vol.8 (11), p.1183-1189

2006

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A facile colorimetric method for the quantification of labile iron pool and total iron in cells and tissue specimens

Scientific reports, 2021-03, Vol.11 (1), p.6008-6008, Article 6008

2021

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Targeted imaging of uPAR expression in vivo with cyclic AE105 variants

Scientific reports, 2023-10, Vol.13 (1), p.17248-17, Article 17248

2023

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Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

Nature (London), 2002-01, Vol.415 (6868), p.180-183

2002

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Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae

Nature biotechnology, 2002-03, Vol.20 (3), p.301-305

2002

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Identifying protein subcellular localisation in scientific literature using bidirectional deep recurrent neural network

Hierarchical network analysis of co-occurring bioentities in literature

PALM-IST: Pathway Assembly from Literature Mining - an Information Search Tool

Dataset from a human-in-the-loop approach to identify functionally important protein residues from literature

A collection of cannabinoid-related negative findings from autaptic hippocampal neurons

Impact of structural biology and the protein data bank on us fda new drug approvals of low molecular weight antineoplastic agents 2019–2023

Literature mining for the biologist: from information retrieval to biological discovery

Defining tissue proteomes by systematic literature review

dbPAF: an integrative database of protein phosphorylation in animals and fungi

CD-CODE: crowdsourcing condensate database and encyclopedia

Compilation of parasitic immunogenic proteins from 30 years of published research using machine learning and natural language processing

Archaea — timeline of the third domain

CODA: Integrating multi-level context-oriented directed associations for analysis of drug effects

High-dimensional single-cell analysis of human natural killer cell heterogeneity

A publication-wide association study (PWAS), historical language models to prioritise novel therapeutic drug targets

In vitro comparison of major memory-support dietary supplements for their effectiveness in reduction/inhibition of beta-amyloid protein fibrils and tau protein tangles: key primary targets for memory loss

Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

Beyond protein lists: AI-assisted interpretation of proteomic investigations in the context of evolving scientific knowledge

Imaging Drosophila gene activation and polymerase pausing in vivo

Mass spectrometry for the evaluation of monoclonal proteins in multiple myeloma and related disorders: an International Myeloma Working Group Mass Spectrometry Committee Report

Linking publication, gene and protein data

A facile colorimetric method for the quantification of labile iron pool and total iron in cells and tissue specimens

Targeted imaging of uPAR expression in vivo with cyclic AE105 variants

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae

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