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Enrichment map: a network-based method for gene-set enrichment visualization and interpretation

PloS one, 2010-11, Vol.5 (11), p.e13984

2010

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Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers

Molecular systems biology, 2013, Vol.9 (1), p.637-n/a

2013

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Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap

Nature protocols, 2019-02, Vol.14 (2), p.482-517

2019

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Functional Genomic Landscape of Human Breast Cancer Drivers, Vulnerabilities, and Resistance

Cell, 2016-01, Vol.164 (1-2), p.293-309

2016

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clusterMaker: a multi-algorithm clustering plugin for Cytoscape

BMC bioinformatics, 2011-11, Vol.12 (1), p.436-436, Article 436

2011

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Tempora: Cell trajectory inference using time-series single-cell RNA sequencing data

PLoS computational biology, 2020-09, Vol.16 (9), p.e1008205-e1008205

2020

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An improved method for scoring protein-protein interactions using semantic similarity within the gene ontology

BMC bioinformatics, 2010-11, Vol.11 (1), p.562-562, Article 562

2010

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Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations

Nature communications, 2018-10, Vol.9 (1), p.4383-21, Article 4383

2018

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The mutational landscape of phosphorylation signaling in cancer

Scientific reports, 2013-10, Vol.3 (1), p.2651-2651, Article 2651

2013

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Cytoscape Web: an interactive web-based network browser

Bioinformatics, 2010-09, Vol.26 (18), p.2347-2348

2010

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Powerful gene set analysis in GWAS with the Generalized Berk-Jones statistic

PLoS genetics, 2019-03, Vol.15 (3), p.e1007530-e1007530

2019

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Pathway Commons 2019 Update: integration, analysis and exploration of pathway data

Nucleic acids research, 2020-01, Vol.48 (D1), p.D489

2020

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The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

Nucleic acids research, 2010-07, Vol.38 (Web Server issue), p.W214

2010

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Developmental Emergence of Adult Neural Stem Cells as Revealed by Single-Cell Transcriptional Profiling

Cell reports (Cambridge), 2017-12, Vol.21 (13), p.3970-3986

2017

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Single cell-derived clonal analysis of human glioblastoma links functional and genomic heterogeneity

Proceedings of the National Academy of Sciences - PNAS, 2015-01, Vol.112 (3), p.851-856

2015

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An automated method for finding molecular complexes in large protein interaction networks

BMC bioinformatics, 2003-01, Vol.4 (1), p.2-2, Article 2

2003

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Generation of mature compact ventricular cardiomyocytes from human pluripotent stem cells

Nature communications, 2021-05, Vol.12 (1), p.3155-3155, Article 3155

2021

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Comprehensive identification of mutational cancer driver genes across 12 tumor types

Scientific reports, 2013-10, Vol.3 (1), p.2650, Article 2650

2013

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Attenuation of miR-126 Activity Expands HSC In Vivo without Exhaustion

Cell stem cell, 2012-12, Vol.11 (6), p.799-811

2012

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Comprehensive Analysis of the Human SH3 Domain Family Reveals a Wide Variety of Non-canonical Specificities

Structure (London), 2017-10, Vol.25 (10), p.1598-1610.e3

2017

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Generation of Functional Liver Sinusoidal Endothelial Cells from Human Pluripotent Stem-Cell-Derived Venous Angioblasts

Cell stem cell, 2020-08, Vol.27 (2), p.254-269.e9

2020

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Evolutionary constraint and disease associations of post-translational modification sites in human genomes

PLoS genetics, 2015-01, Vol.11 (1), p.e1004919-e1004919

2015

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Mapping the Hsp90 genetic interaction network in Candida albicans reveals environmental contingency and rewired circuitry

PLoS genetics, 2012-03, Vol.8 (3), p.e1002562

2012

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MIMP: predicting the impact of mutations on kinase-substrate phosphorylation

Nature methods, 2015-06, Vol.12 (6), p.531

2015

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Enrichment map: a network-based method for gene-set enrichment visualization and interpretation

Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers

Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap

Functional Genomic Landscape of Human Breast Cancer Drivers, Vulnerabilities, and Resistance

clusterMaker: a multi-algorithm clustering plugin for Cytoscape

Tempora: Cell trajectory inference using time-series single-cell RNA sequencing data

An improved method for scoring protein-protein interactions using semantic similarity within the gene ontology

Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations

The mutational landscape of phosphorylation signaling in cancer

Cytoscape Web: an interactive web-based network browser

Powerful gene set analysis in GWAS with the Generalized Berk-Jones statistic

Pathway Commons 2019 Update: integration, analysis and exploration of pathway data

The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

Developmental Emergence of Adult Neural Stem Cells as Revealed by Single-Cell Transcriptional Profiling

Single cell-derived clonal analysis of human glioblastoma links functional and genomic heterogeneity

An automated method for finding molecular complexes in large protein interaction networks

Generation of mature compact ventricular cardiomyocytes from human pluripotent stem cells

Comprehensive identification of mutational cancer driver genes across 12 tumor types

Attenuation of miR-126 Activity Expands HSC In Vivo without Exhaustion

Comprehensive Analysis of the Human SH3 Domain Family Reveals a Wide Variety of Non-canonical Specificities

Generation of Functional Liver Sinusoidal Endothelial Cells from Human Pluripotent Stem-Cell-Derived Venous Angioblasts

Evolutionary constraint and disease associations of post-translational modification sites in human genomes

Inhibition of the Mitochondrial Protease ClpP as a Therapeutic Strategy for Human Acute Myeloid Leukemia

Mapping the Hsp90 genetic interaction network in Candida albicans reveals environmental contingency and rewired circuitry

MIMP: predicting the impact of mutations on kinase-substrate phosphorylation

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