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Ancestral protein reconstruction: techniques and applications

Biological chemistry, 2016-01, Vol.397 (1), p.1-21

2016

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Rosetta:MSF:NN: Boosting performance of multi-state computational protein design with a neural network

PloS one, 2021-08, Vol.16 (8), p.e0256691-e0256691

2021

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Prediction of quaternary structure by analysis of hot spot residues in protein‐protein interfaces: the case of anthranilate phosphoribosyltransferases

Proteins, structure, function, and bioinformatics, 2019-10, Vol.87 (10), p.815-825

2019

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Ancestral Tryptophan Synthase Reveals Functional Sophistication of Primordial Enzyme Complexes

Cell chemical biology, 2016-06, Vol.23 (6), p.709-715

2016

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Characterizing the nuclease accessibility of DNA in human cells to map higher order structures of chromatin

Nucleic acids research, 2019-02, Vol.47 (3), p.1239-1254

2019

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Oleic acid is a precursor of linoleic acid and the male sex pheromone in Nasonia vitripennis

Insect biochemistry and molecular biology, 2014-08, Vol.51, p.33-40

2014

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Rekonstruktion urzeitlicher Proteine

Biospektrum, 2015-11, Vol.21 (7), p.712-714

2015

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Identification of the retinoschisin-binding site on the retinal Na/K-ATPase

PloS one, 2019-05, Vol.14 (5), p.e0216320-e0216320

2019

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Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes

BMC genomics, 2012-04, Vol.13 (1), p.144-144, Article 144

2012

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Long-Term Persistence of Bi-functionality Contributes to the Robustness of Microbial Life through Exaptation

PLoS genetics, 2016-01, Vol.12 (1), p.e1005836-e1005836

2016

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Identification and characterization of two novel primate-specific histone H3 variants, H3.X and H3.Y

The Journal of cell biology, 2010-09, Vol.190 (5), p.777-791

2010

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Generation of catalytic human Ago4 identifies structural elements important for RNA cleavage

RNA (Cambridge), 2014-10, Vol.20 (10), p.1532-1538

2014

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Plasmodium falciparum Nucleosomes Exhibit Reduced Stability and Lost Sequence Dependent Nucleosome Positioning

PLoS pathogens, 2016-12, Vol.12 (12), p.e1006080-e1006080

2016

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Light-Regulation of Tryptophan Synthase by Combining Protein Design and Enzymology

International journal of molecular sciences, 2019-10, Vol.20 (20), p.5106

2019

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Prescont: Predicting protein-protein interfaces utilizing four residue properties

Proteins, structure, function, and bioinformatics, 2012-01, Vol.80 (1), p.154-168

2012

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Evidence for the preferential reuse of sub‐domain motifs in primordial protein folds

Proteins, structure, function, and bioinformatics, 2021-09, Vol.89 (9), p.1167-1179

2021

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The Genome Sequence of Clostridium tetani, the Causative Agent of Tetanus Disease

Proceedings of the National Academy of Sciences - PNAS, 2003-02, Vol.100 (3), p.1316-1321

2003

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Improving thermal and detergent stability of Bacillus stearothermophilus neopullulanase by rational enzyme design

Protein engineering, design and selection, 2015-06, Vol.28 (6), p.147-151

2015

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Genes optimized by evolution for accurate and fast translation encode in Archaea and Bacteria a broad and characteristic spectrum of protein functions

BMC genomics, 2010-11, Vol.11 (1), p.617-617, Article 617

2010

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Analysis of allosteric communication in a multienzyme complex by ancestral sequence reconstruction

Proceedings of the National Academy of Sciences - PNAS, 2020-01, Vol.117 (1), p.346-354

2020

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Experimental and computational analysis of the ancestry of an evolutionary young enzyme from histidine biosynthesis

Protein science, 2023-01, Vol.32 (1), p.e4536-n/a

2023

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A Fold-Independent Interface Residue Is Crucial for Complex Formation and Allosteric Signaling in Class I Glutamine Amidotransferases

Biochemistry (Easton), 2019-06, Vol.58 (22), p.2584-2588

2019

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Maize EMBRYO SAC family peptides interact differentially with pollen tubes and fungal cells

Journal of experimental botany, 2015-08, Vol.66 (17), p.5205-5216

2015

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Hexamerization of Geranylgeranylglyceryl Phosphate Synthase Ensures Structural Integrity and Catalytic Activity at High Temperatures

Biochemistry (Easton), 2018-04, Vol.57 (16), p.2335-2348

2018

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The Adaptor Protein ENY2 Is a Component of the Deubiquitination Module of the Arabidopsis SAGA Transcriptional Co-activator Complex but not of the TREX-2 Complex

Journal of molecular biology, 2018-05, Vol.430 (10), p.1479-1494

2018

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Ancestral protein reconstruction: techniques and applications

Rosetta:MSF:NN: Boosting performance of multi-state computational protein design with a neural network

Prediction of quaternary structure by analysis of hot spot residues in protein‐protein interfaces: the case of anthranilate phosphoribosyltransferases

Ancestral Tryptophan Synthase Reveals Functional Sophistication of Primordial Enzyme Complexes

Characterizing the nuclease accessibility of DNA in human cells to map higher order structures of chromatin

Oleic acid is a precursor of linoleic acid and the male sex pheromone in Nasonia vitripennis

Rekonstruktion urzeitlicher Proteine

Identification of the retinoschisin-binding site on the retinal Na/K-ATPase

Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes

Long-Term Persistence of Bi-functionality Contributes to the Robustness of Microbial Life through Exaptation

Identification and characterization of two novel primate-specific histone H3 variants, H3.X and H3.Y

Generation of catalytic human Ago4 identifies structural elements important for RNA cleavage

Plasmodium falciparum Nucleosomes Exhibit Reduced Stability and Lost Sequence Dependent Nucleosome Positioning

Light-Regulation of Tryptophan Synthase by Combining Protein Design and Enzymology

Prescont: Predicting protein-protein interfaces utilizing four residue properties

Evidence for the preferential reuse of sub‐domain motifs in primordial protein folds

The Genome Sequence of Clostridium tetani, the Causative Agent of Tetanus Disease

Improving thermal and detergent stability of Bacillus stearothermophilus neopullulanase by rational enzyme design

Genes optimized by evolution for accurate and fast translation encode in Archaea and Bacteria a broad and characteristic spectrum of protein functions

Analysis of allosteric communication in a multienzyme complex by ancestral sequence reconstruction

Experimental and computational analysis of the ancestry of an evolutionary young enzyme from histidine biosynthesis

A Fold-Independent Interface Residue Is Crucial for Complex Formation and Allosteric Signaling in Class I Glutamine Amidotransferases

Maize EMBRYO SAC family peptides interact differentially with pollen tubes and fungal cells

Hexamerization of Geranylgeranylglyceryl Phosphate Synthase Ensures Structural Integrity and Catalytic Activity at High Temperatures

The Adaptor Protein ENY2 Is a Component of the Deubiquitination Module of the Arabidopsis SAGA Transcriptional Co-activator Complex but not of the TREX-2 Complex

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