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Multiple-Localization and Hub Proteins

PloS one, 2016-06, Vol.11 (6), p.e0156455-e0156455

2016

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All Atom Motion Tree detects side chain-related motions and their coupling with domain motion in proteins

Biophysics and Physicobiology, 2019, Vol.16, pp.280-286

2019

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Elastic network model reveals distinct flexibilities of capping proteins bound to CARMIL and twinfilin‐tail

Proteins, structure, function, and bioinformatics, 2024-01, Vol.92 (1), p.37-43

2024

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Motion Tree Delineates Hierarchical Structure of Protein Dynamics Observed in Molecular Dynamics Simulation

PloS one, 2015-07, Vol.10 (7), p.e0131583-e0131583

2015

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Dual‐wield NTPases: A novel protein family mined from AlphaFold DB

Protein science, 2024-04, Vol.33 (4), p.e4934-n/a

2024

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Federated scheduling in clustered many-core processors

2021 IEEE/ACM 25th International Symposium on Distributed Simulation and Real Time Applications (DS-RT), 2021, p.1-8

2021

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Description of Structural Changes by Motion Tree

Biophysical journal, 2019-02, Vol.116 (3), p.339a-339a

2019

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Structural Insights into the Regulation of Actin Capping Protein by Twinfilin C-terminal Tail

Journal of molecular biology, 2021-04, Vol.433 (9), p.166891-166891, Article 166891

2021

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Interface property responsible for effective interactions of protean segments: Intrinsically disordered regions that undergo disorder-to-order transitions upon binding

Biochemical and biophysical research communications, 2016-09, Vol.478 (1), p.123-127

2016

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IDEAL in 2014 illustrates interaction networks composed of intrinsically disordered proteins and their binding partners

Nucleic acids research, 2014-01, Vol.42 (Database issue), p.D320

2014

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Structures and mechanisms of actin ATP hydrolysis

Proceedings of the National Academy of Sciences - PNAS, 2022-10, Vol.119 (43), p.1-e2122641119

2022

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IDEAL: Intrinsically Disordered proteins with Extensive Annotations and Literature

Nucleic acids research, 2012-01, Vol.40 (Database issue), p.D507

2012

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Alteration of oligomeric state and domain architecture is essential for functional transformation between transferase and hydrolase with the same scaffold

Protein science, 2009-10, Vol.18 (10), p.2060-2066

2009

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Cover and spacer insertions: Small nonhydrophobic accessories that assist protein oligomerization

Proteins, structure, function, and bioinformatics, 2011-08, Vol.79 (8), p.2372-2379

2011

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Hierarchical domain-motion analysis of conformational changes in sarcoplasmic reticulum Ca super(2+)-ATPase

Proteins, structure, function, and bioinformatics, 2015-04, Vol.83 (4), p.746-756

2015

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Hierarchical domain‐motion analysis of conformational changes in sarcoplasmic reticulum Ca 2+ ‐ATPase

Proteins, structure, function, and bioinformatics, 2015-04, Vol.83 (4), p.746-756

2015

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F-Form Actin Crystal Structures: Mechanisms of Actin Assembly and F-Actin ATP-Hydrolysis

Biophysical journal, 2018-02, Vol.114 (3), p.381a-381a

2018

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Hierarchical Description of Complicated Structural Change in Protein with Motion Tree

Seibutsu butsuri = Biophysics, 2015, Vol.55 (3), p.142-144

2015

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Water Pathway Analysis of Multi-Drug Efflux Transporter AcrB

Biophysical journal, 2016-02, Vol.110 (3), p.631a-631a

2016

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Different Scale Conformational Changes of SERCA Analyzed with Motion Tree Method

Biophysical journal, 2013-01, Vol.104 (2), p.665a-665a

2013

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Protein Structural Change upon Ligand Binding Correlates with Enzymatic Reaction Mechanism

Journal of molecular biology, 2008-06, Vol.379 (3), p.397-401

2008

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1E1548 蛋白質複合体のための構造比較法SCPCの開発(ゲノム生物学、生命情報科学,第49回日本生物物理学会年会)

生物物理, 2011/08/15, Vol.51(supplement), pp.S41

2011

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1E1548 SCPC : A method to structurally compare protein complexes(Genome biology, Bioinformatics,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri, 2011/08/15, Vol.51(supplement), pp.S41

2011

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3P262 Hierarchical description and extensive classification of protein structural changes by Motion Tree(22A. Bioinformatics: Structural genomics,Poster)

Seibutsu Butsuri, 2013/09/13, Vol.53(supplement1-2), pp.S255

2013

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3P262 Motion Tree法による蛋白質構造変化の階層的記述と網羅的分類(22A.生命情報科学:構造ゲノミクス,ポスター,日本生物物理学会年会第51回(2013年度))

生物物理, 2013/09/13, Vol.53(supplement1-2), pp.S255

2013

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Multiple-Localization and Hub Proteins

All Atom Motion Tree detects side chain-related motions and their coupling with domain motion in proteins

Elastic network model reveals distinct flexibilities of capping proteins bound to CARMIL and twinfilin‐tail

Motion Tree Delineates Hierarchical Structure of Protein Dynamics Observed in Molecular Dynamics Simulation

Dual‐wield NTPases: A novel protein family mined from AlphaFold DB

Federated scheduling in clustered many-core processors

Description of Structural Changes by Motion Tree

Structural Insights into the Regulation of Actin Capping Protein by Twinfilin C-terminal Tail

Interface property responsible for effective interactions of protean segments: Intrinsically disordered regions that undergo disorder-to-order transitions upon binding

IDEAL in 2014 illustrates interaction networks composed of intrinsically disordered proteins and their binding partners

Structures and mechanisms of actin ATP hydrolysis

IDEAL: Intrinsically Disordered proteins with Extensive Annotations and Literature

Alteration of oligomeric state and domain architecture is essential for functional transformation between transferase and hydrolase with the same scaffold

Cover and spacer insertions: Small nonhydrophobic accessories that assist protein oligomerization

Hierarchical domain-motion analysis of conformational changes in sarcoplasmic reticulum Ca super(2+)-ATPase

Hierarchical domain‐motion analysis of conformational changes in sarcoplasmic reticulum Ca 2+ ‐ATPase

F-Form Actin Crystal Structures: Mechanisms of Actin Assembly and F-Actin ATP-Hydrolysis

Hierarchical Description of Complicated Structural Change in Protein with Motion Tree

Water Pathway Analysis of Multi-Drug Efflux Transporter AcrB

Different Scale Conformational Changes of SERCA Analyzed with Motion Tree Method

Protein Structural Change upon Ligand Binding Correlates with Enzymatic Reaction Mechanism

1E1548 蛋白質複合体のための構造比較法SCPCの開発(ゲノム生物学、生命情報科学,第49回日本生物物理学会年会)

1E1548 SCPC : A method to structurally compare protein complexes(Genome biology, Bioinformatics,The 49th Annual Meeting of the Biophysical Society of Japan)

3P262 Hierarchical description and extensive classification of protein structural changes by Motion Tree(22A. Bioinformatics: Structural genomics,Poster)

3P262 Motion Tree法による蛋白質構造変化の階層的記述と網羅的分類(22A.生命情報科学:構造ゲノミクス,ポスター,日本生物物理学会年会第51回(2013年度))

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