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Ancestral protein reconstruction: techniques and applications

Biological chemistry, 2016-01, Vol.397 (1), p.1-21

2016

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Conserved genomic neighborhood is a strong but no perfect indicator for a direct interaction of microbial gene products

BMC bioinformatics, 2020-01, Vol.21 (1), p.5-5, Article 5

2020

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Rosetta design with co-evolutionary information retains protein function

PLoS computational biology, 2021-01, Vol.17 (1), p.e1008568-e1008568

2021

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Rosetta:MSF:NN: Boosting performance of multi-state computational protein design with a neural network

PloS one, 2021-08, Vol.16 (8), p.e0256691-e0256691

2021

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Rosetta:MSF: a modular framework for multi-state computational protein design

PLoS computational biology, 2017-06, Vol.13 (6), p.e1005600-e1005600

2017

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Prediction of quaternary structure by analysis of hot spot residues in protein‐protein interfaces: the case of anthranilate phosphoribosyltransferases

Proteins, structure, function, and bioinformatics, 2019-10, Vol.87 (10), p.815-825

2019

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Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models

BMC bioinformatics, 2006-03, Vol.7 (1), p.142-142, Article 142

2006

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Ancestral Tryptophan Synthase Reveals Functional Sophistication of Primordial Enzyme Complexes

Cell chemical biology, 2016-06, Vol.23 (6), p.709-715

2016

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Characterizing the nuclease accessibility of DNA in human cells to map higher order structures of chromatin

Nucleic acids research, 2019-02, Vol.47 (3), p.1239-1254

2019

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Oleic acid is a precursor of linoleic acid and the male sex pheromone in Nasonia vitripennis

Insect biochemistry and molecular biology, 2014-08, Vol.51, p.33-40

2014

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Rekonstruktion urzeitlicher Proteine

Biospektrum, 2015-11, Vol.21 (7), p.712-714

2015

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AGeNNT: annotation of enzyme families by means of refined neighborhood networks

BMC bioinformatics, 2017-05, Vol.18 (1), p.274-274, Article 274

2017

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SIGI: score-based identification of genomic islands

BMC bioinformatics, 2004-03, Vol.5 (1), p.22-22, Article 22

Merkl, Rainer

2004

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Identification of the retinoschisin-binding site on the retinal Na/K-ATPase

PloS one, 2019-05, Vol.14 (5), p.e0216320-e0216320

2019

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Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes

BMC genomics, 2012-04, Vol.13 (1), p.144-144, Article 144

2012

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Long-Term Persistence of Bi-functionality Contributes to the Robustness of Microbial Life through Exaptation

PLoS genetics, 2016-01, Vol.12 (1), p.e1005836-e1005836

2016

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Identification and characterization of two novel primate-specific histone H3 variants, H3.X and H3.Y

The Journal of cell biology, 2010-09, Vol.190 (5), p.777-791

2010

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Generation of catalytic human Ago4 identifies structural elements important for RNA cleavage

RNA (Cambridge), 2014-10, Vol.20 (10), p.1532-1538

2014

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Plasmodium falciparum Nucleosomes Exhibit Reduced Stability and Lost Sequence Dependent Nucleosome Positioning

PLoS pathogens, 2016-12, Vol.12 (12), p.e1006080-e1006080

2016

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Light-Regulation of Tryptophan Synthase by Combining Protein Design and Enzymology

International journal of molecular sciences, 2019-10, Vol.20 (20), p.5106

2019

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Prescont: Predicting protein-protein interfaces utilizing four residue properties

Proteins, structure, function, and bioinformatics, 2012-01, Vol.80 (1), p.154-168

2012

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Evidence for the preferential reuse of sub‐domain motifs in primordial protein folds

Proteins, structure, function, and bioinformatics, 2021-09, Vol.89 (9), p.1167-1179

2021

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An assessment of catalytic residue 3D ensembles for the prediction of enzyme function

BMC bioinformatics, 2015-11, Vol.16 (358), p.359-359, Article 359

2015

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The Genome Sequence of Clostridium tetani, the Causative Agent of Tetanus Disease

Proceedings of the National Academy of Sciences - PNAS, 2003-02, Vol.100 (3), p.1316-1321

2003

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Improving thermal and detergent stability of Bacillus stearothermophilus neopullulanase by rational enzyme design

Protein engineering, design and selection, 2015-06, Vol.28 (6), p.147-151

2015

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Ancestral protein reconstruction: techniques and applications

Conserved genomic neighborhood is a strong but no perfect indicator for a direct interaction of microbial gene products

Rosetta design with co-evolutionary information retains protein function

Rosetta:MSF:NN: Boosting performance of multi-state computational protein design with a neural network

Rosetta:MSF: a modular framework for multi-state computational protein design

Prediction of quaternary structure by analysis of hot spot residues in protein‐protein interfaces: the case of anthranilate phosphoribosyltransferases

Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models

Ancestral Tryptophan Synthase Reveals Functional Sophistication of Primordial Enzyme Complexes

Characterizing the nuclease accessibility of DNA in human cells to map higher order structures of chromatin

Oleic acid is a precursor of linoleic acid and the male sex pheromone in Nasonia vitripennis

Rekonstruktion urzeitlicher Proteine

AGeNNT: annotation of enzyme families by means of refined neighborhood networks

SIGI: score-based identification of genomic islands

Identification of the retinoschisin-binding site on the retinal Na/K-ATPase

Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes

Long-Term Persistence of Bi-functionality Contributes to the Robustness of Microbial Life through Exaptation

Identification and characterization of two novel primate-specific histone H3 variants, H3.X and H3.Y

Generation of catalytic human Ago4 identifies structural elements important for RNA cleavage

Plasmodium falciparum Nucleosomes Exhibit Reduced Stability and Lost Sequence Dependent Nucleosome Positioning

Light-Regulation of Tryptophan Synthase by Combining Protein Design and Enzymology

Prescont: Predicting protein-protein interfaces utilizing four residue properties

Evidence for the preferential reuse of sub‐domain motifs in primordial protein folds

An assessment of catalytic residue 3D ensembles for the prediction of enzyme function

The Genome Sequence of Clostridium tetani, the Causative Agent of Tetanus Disease

Improving thermal and detergent stability of Bacillus stearothermophilus neopullulanase by rational enzyme design

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