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Multi-Omics Profiling Reveals Phenotypic and Functional Heterogeneity of Neutrophils in COVID-19

International journal of molecular sciences, 2024-04, Vol.25 (7), p.3841

2024

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Single-cell RNA-seq public data reveal the gene regulatory network landscape of respiratory epithelial and peripheral immune cells in COVID-19 patients

Frontiers in immunology, 2023-10, Vol.14, p.1194614-1194614

2023

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Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data

BMC bioinformatics, 2018-07, Vol.19 (1), p.266-266, Article 266

2018

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COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference

Nucleic acids research, 2019-01, Vol.47 (D1), p.D55

2019

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IBiSA_Tools: A Computational Toolkit for Ion-Binding State Analysis in Molecular Dynamics Trajectories of Ion Channels

PloS one, 2016-12, Vol.11 (12), p.e0167524-e0167524

2016

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SR-B1 Is a Silica Receptor that Mediates Canonical Inflammasome Activation

Cell reports (Cambridge), 2017-01, Vol.18 (5), p.1298-1311

2017

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A 12-kb structural variation in progressive myoclonic epilepsy was newly identified by long-read whole-genome sequencing

Journal of human genetics, 2019-05, Vol.64 (5), p.359-368

2019

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Enhancer remodeling promotes tumor-initiating activity in NRF2-activated non-small cell lung cancers

Nature communications, 2020-11, Vol.11 (1), p.5911-19, Article 5911

2020

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Current status and future perspectives of the evaluation of missense variants by using three-dimensional structures of proteins

Biophysics and Physicobiology, 2022, Vol.19, pp.e190023

2022

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Coexpression landscape in ATTED-II: Usage of gene list and gene network for various types of pathways

Journal of plant research, 2010-05, Vol.123 (3), p.311-319

2010

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jMorp updates in 2020: large enhancement of multi-omics data resources on the general Japanese population

Nucleic acids research, 2021-01, Vol.49 (D1), p.D536

2021

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Construction and integration of three de novo Japanese human genome assemblies toward a population-specific reference

Nature communications, 2021-01, Vol.12 (1), p.226-226, Article 226

2021

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Theoretical characterisation of strand cross-correlation in ChIP-seq

BMC bioinformatics, 2020-09, Vol.21 (1), p.1-417, Article 417

2020

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Identification and Validation of Combination Plasma Biomarker of Afamin, Fibronectin and Sex Hormone-Binding Globulin to Predict Pre-eclampsia

Biological and Pharmaceutical Bulletin, 2021/06/01, Vol.44(6), pp.804-815

2021

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Facial UV photo imaging for skin pigmentation assessment using conditional generative adversarial networks

Scientific reports, 2021-01, Vol.11 (1), p.1213-1213, Article 1213

2021

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Public Access to Summary Statistics for Genome-wide Association Studies of Body Mass Index, Weight, and Height Among Healthy Japanese Individuals: The Japanese Consortium of Genetic Epidemiology Studies

Journal of Epidemiology, 2022/02/05, Vol.32(2), pp.115-116

2022

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Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals

Nature communications, 2015-08, Vol.6 (1), p.8018-8018, Article 8018

2015

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Hub promiscuity in protein-protein interaction networks

International Journal of Molecular Sciences, 2010-04, Vol.11 (4), p.1930-1943

2010

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Impacts of NRF2 activation in non–small‐cell lung cancer cell lines on extracellular metabolites

Cancer science, 2020-02, Vol.111 (2), p.667-678

2020

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De novo profile generation based on sequence context specificity with the long short-term memory network

BMC bioinformatics, 2018-07, Vol.19 (1), p.272-272, Article 272

2018

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High levels of chromosomal instability facilitate the tumor growth and sphere formation

Cancer science, 2022-08, Vol.113 (8), p.2727-2737

2022

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Ethnic and trans-ethnic genome-wide association studies identify new loci influencing Japanese Alzheimer's disease risk

Translational psychiatry, 2021-03, Vol.11 (1), p.151-151, Article 151

2021

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3.5KJPNv2: an allele frequency panel of 3552 Japanese individuals including the X chromosome

Human genome variation, 2019-06, Vol.6 (1), p.28-28, Article 28

2019

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Whole exome sequencing and establishment of an organoid culture of the carcinoma showing thymus-like differentiation (CASTLE) of the parotid gland

Virchows Archiv : an international journal of pathology, 2021-06, Vol.478 (6), p.1149-1159

2021

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COXPRESdb: a database to compare gene coexpression in seven model animals

Nucleic acids research, 2011-01, Vol.39 (Database issue), p.D1016

2011

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Multi-Omics Profiling Reveals Phenotypic and Functional Heterogeneity of Neutrophils in COVID-19

Single-cell RNA-seq public data reveal the gene regulatory network landscape of respiratory epithelial and peripheral immune cells in COVID-19 patients

Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data

COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference

IBiSA_Tools: A Computational Toolkit for Ion-Binding State Analysis in Molecular Dynamics Trajectories of Ion Channels

SR-B1 Is a Silica Receptor that Mediates Canonical Inflammasome Activation

A 12-kb structural variation in progressive myoclonic epilepsy was newly identified by long-read whole-genome sequencing

Enhancer remodeling promotes tumor-initiating activity in NRF2-activated non-small cell lung cancers

Current status and future perspectives of the evaluation of missense variants by using three-dimensional structures of proteins

Coexpression landscape in ATTED-II: Usage of gene list and gene network for various types of pathways

jMorp updates in 2020: large enhancement of multi-omics data resources on the general Japanese population

Construction and integration of three de novo Japanese human genome assemblies toward a population-specific reference

Theoretical characterisation of strand cross-correlation in ChIP-seq

Identification and Validation of Combination Plasma Biomarker of Afamin, Fibronectin and Sex Hormone-Binding Globulin to Predict Pre-eclampsia

Facial UV photo imaging for skin pigmentation assessment using conditional generative adversarial networks

Public Access to Summary Statistics for Genome-wide Association Studies of Body Mass Index, Weight, and Height Among Healthy Japanese Individuals: The Japanese Consortium of Genetic Epidemiology Studies

Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals

Hub promiscuity in protein-protein interaction networks

Impacts of NRF2 activation in non–small‐cell lung cancer cell lines on extracellular metabolites

De novo profile generation based on sequence context specificity with the long short-term memory network

High levels of chromosomal instability facilitate the tumor growth and sphere formation

Ethnic and trans-ethnic genome-wide association studies identify new loci influencing Japanese Alzheimer's disease risk

3.5KJPNv2: an allele frequency panel of 3552 Japanese individuals including the X chromosome

Whole exome sequencing and establishment of an organoid culture of the carcinoma showing thymus-like differentiation (CASTLE) of the parotid gland

COXPRESdb: a database to compare gene coexpression in seven model animals

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