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The vocabulary of microbiome research: a proposal

Microbiome, 2015-07, Vol.3 (1), p.31-31, Article 31

2015

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An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform

Microbiome, 2014-02, Vol.2 (1), p.6-6, Article 6

2014

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Evaluation of vaginal microbiome equilibrium states identifies microbial parameters linked to resilience after menses and antibiotic therapy

PLoS computational biology, 2023-08, Vol.19 (8), p.e1011295-e1011295

2023

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Supporting scale-up of COVID-19 RT-PCR testing processes with discrete event simulation

PloS one, 2021-07, Vol.16 (7), p.e0255214-e0255214

2021

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Identification of shared bacterial strains in the vaginal microbiota of related and unrelated reproductive-age mothers and daughters using genome-resolved metagenomics

PloS one, 2022-10, Vol.17 (10)

2022

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An Antibiotic-Impacted Microbiota Compromises the Development of Colonic Regulatory T Cells and Predisposes to Dysregulated Immune Responses

mBio, 2021-02, Vol.12 (1)

2021

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Host-targeted niclosamide inhibits C. difficile virulence and prevents disease in mice without disrupting the gut microbiota

Nature communications, 2018-12, Vol.9 (1), p.5233-11, Article 5233

2018

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More data needed on neonatal microbiome seeding

Microbiome, 2022-06, Vol.10 (1), p.88-88, Article 88

2022

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Vaginal biogenic amines: biomarkers of bacterial vaginosis or precursors to vaginal dysbiosis?

Frontiers in physiology, 2015-09, Vol.6, p.253-253

2015

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Beyond Toxin Transport: Novel Role of ABC Transporter for Enzymatic Machinery of Cereulide NRPS Assembly Line

mBio, 2020-09, Vol.11 (5)

2020

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Ultrahigh-Throughput Multiplexing and Sequencing of >500-Base-Pair Amplicon Regions on the Illumina HiSeq 2500 Platform

mSystems, 2019-01, Vol.4 (1)

2019

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Asymptomatic Bacterial Vaginosis Is Associated With Depletion of Mature Superficial Cells Shed From the Vaginal Epithelium

Frontiers in cellular and infection microbiology, 2020-03, Vol.10, p.106-106

2020

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Reusing a prepaid health plan’s fecal immunochemical tests for microbiome associations with colorectal adenoma

Scientific reports, 2022-08, Vol.12 (1), p.14801-14801, Article 14801

2022

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Daily temporal dynamics of vaginal microbiota before, during and after episodes of bacterial vaginosis

Microbiome, 2013-12, Vol.1 (1), p.29-29, Article 29

2013

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HIV-associated vaginal microbiome and inflammation predict spontaneous preterm birth in Zambia

Scientific reports, 2022-05, Vol.12 (1), p.8573-8573, Article 8573

2022

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Microbial Biomarkers of Intestinal Barrier Maturation in Preterm Infants

Frontiers in microbiology, 2018-11, Vol.9, p.2755-2755

2018

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Highly Specialized Carbohydrate Metabolism Capability in Bifidobacterium Strains Associated with Intestinal Barrier Maturation in Early Preterm Infants

mBio, 2022-06, Vol.13 (3), p.e0129922

2022

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"Available upon request": not good enough for microbiome data

Microbiome, 2018-01, Vol.6 (1), p.8-8, Article 8

2018

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Correction: Integrating compositional and functional content to describe vaginal microbiomes in health and disease

Microbiome, 2024-02, Vol.12 (1), p.21-21, Article 21

2024

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A high-throughput sequencing assay to comprehensively detect and characterize unicellular eukaryotes and helminths from biological and environmental samples

Microbiome, 2018-10, Vol.6 (1), p.195-195, Article 195

2018

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Mycoplasma hominis and Mycoplasma genitalium in the Vaginal Microbiota and Persistent High-Risk Human Papillomavirus Infection

Frontiers in public health, 2017-06, Vol.5, p.140-140

2017

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Short-term feeding of defatted bovine colostrum mitigates inflammation in the gut via changes in metabolites and microbiota in a chicken animal model

Animal microbiome, 2023-01, Vol.5 (1), p.6-6, Article 6

2023

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Immune Response and Microbiota Profiles during Coinfection with Plasmodium vivax and Soil-Transmitted Helminths

mBio, 2020-10, Vol.11 (5)

2020

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ExpLOring the role of the intestinal MiCrobiome in InflammATory bowel disease-AssocIated SpONdylarthritis (LOCATION-IBD)

Heliyon, 2024-02, Vol.10 (4), p.e26571-e26571, Article e26571

2024

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The Impact of Over-The-Counter Lactic Acid Containing Vaginal Gels on the Integrity and Inflammatory State of the Vaginal Epithelium in vitro

Frontiers in reproductive health, 2022-06, Vol.4, p.915948-915948

2022

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The vocabulary of microbiome research: a proposal

An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform

Evaluation of vaginal microbiome equilibrium states identifies microbial parameters linked to resilience after menses and antibiotic therapy

Supporting scale-up of COVID-19 RT-PCR testing processes with discrete event simulation

Identification of shared bacterial strains in the vaginal microbiota of related and unrelated reproductive-age mothers and daughters using genome-resolved metagenomics

An Antibiotic-Impacted Microbiota Compromises the Development of Colonic Regulatory T Cells and Predisposes to Dysregulated Immune Responses

Host-targeted niclosamide inhibits C. difficile virulence and prevents disease in mice without disrupting the gut microbiota

More data needed on neonatal microbiome seeding

Vaginal biogenic amines: biomarkers of bacterial vaginosis or precursors to vaginal dysbiosis?

Beyond Toxin Transport: Novel Role of ABC Transporter for Enzymatic Machinery of Cereulide NRPS Assembly Line

Ultrahigh-Throughput Multiplexing and Sequencing of >500-Base-Pair Amplicon Regions on the Illumina HiSeq 2500 Platform

Asymptomatic Bacterial Vaginosis Is Associated With Depletion of Mature Superficial Cells Shed From the Vaginal Epithelium

Reusing a prepaid health plan’s fecal immunochemical tests for microbiome associations with colorectal adenoma

Daily temporal dynamics of vaginal microbiota before, during and after episodes of bacterial vaginosis

HIV-associated vaginal microbiome and inflammation predict spontaneous preterm birth in Zambia

Microbial Biomarkers of Intestinal Barrier Maturation in Preterm Infants

Highly Specialized Carbohydrate Metabolism Capability in Bifidobacterium Strains Associated with Intestinal Barrier Maturation in Early Preterm Infants

"Available upon request": not good enough for microbiome data

Correction: Integrating compositional and functional content to describe vaginal microbiomes in health and disease

A high-throughput sequencing assay to comprehensively detect and characterize unicellular eukaryotes and helminths from biological and environmental samples

Mycoplasma hominis and Mycoplasma genitalium in the Vaginal Microbiota and Persistent High-Risk Human Papillomavirus Infection

Short-term feeding of defatted bovine colostrum mitigates inflammation in the gut via changes in metabolites and microbiota in a chicken animal model

Immune Response and Microbiota Profiles during Coinfection with Plasmodium vivax and Soil-Transmitted Helminths

ExpLOring the role of the intestinal MiCrobiome in InflammATory bowel disease-AssocIated SpONdylarthritis (LOCATION-IBD)

The Impact of Over-The-Counter Lactic Acid Containing Vaginal Gels on the Integrity and Inflammatory State of the Vaginal Epithelium in vitro

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