Nature methods, 2020-12, Vol.17 (12), p.1229-1236
2020
Volltextzugriff (PDF)
Details
- Autor(en) / Beteiligte
- Titel
- diaPASEF: parallel accumulation-serial fragmentation combined with data-independent acquisition
- Ist Teil von
- Nature methods, 2020-12, Vol.17 (12), p.1229-1236
- Ort / Verlag
- United States
- Erscheinungsjahr
- 2020
- Quelle
- MEDLINE
- Beschreibungen/Notizen
- Data-independent acquisition modes isolate and concurrently fragment populations of different precursors by cycling through segments of a predefined precursor m/z range. Although these selection windows collectively cover the entire m/z range, overall, only a few per cent of all incoming ions are isolated for mass analysis. Here, we make use of the correlation of molecular weight and ion mobility in a trapped ion mobility device (timsTOF Pro) to devise a scan mode that samples up to 100% of the peptide precursor ion current in m/z and mobility windows. We extend an established targeted data extraction workflow by inclusion of the ion mobility dimension for both signal extraction and scoring and thereby increase the specificity for precursor identification. Data acquired from whole proteome digests and mixed organism samples demonstrate deep proteome coverage and a high degree of reproducibility as well as quantitative accuracy, even from 10 ng sample amounts.
- Sprache
- Englisch
- Identifikatoren
- ISSN: 1548-7091eISSN: 1548-7105DOI: 10.1038/s41592-020-00998-0Titel-ID: cdi_pubmed_primary_33257825
- Format
- –
- Schlagworte
- Cell Line, Tumor, Data Science - methods, HeLa Cells, High-Throughput Screening Assays - methods, Humans, Ion Channels - metabolism, Ion Transport - physiology, Ions - chemistry, Proteome - metabolism, Proteomics - methods, Reproducibility of Results, Tandem Mass Spectrometry - methods