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RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

Bioinformatics, 2019-11, Vol.35 (21), p.4453-4455

2019

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ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models

Molecular biology and evolution, 2020-01, Vol.37 (1), p.291-294

2020

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ProtTest 3: fast selection of best-fit models of protein evolution

Bioinformatics, 2011-04, Vol.27 (8), p.1164-1165

2011

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jModelTest 2: more models, new heuristics and parallel computing

Nature methods, 2012-08, Vol.9 (8), p.772-772

2012

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EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences

Systematic biology, 2019-03, Vol.68 (2), p.365-369

2019

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The State of Software for Evolutionary Biology

Molecular biology and evolution, 2018-05, Vol.35 (5), p.1037-1046

2018

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Does the choice of nucleotide substitution models matter topologically?

BMC bioinformatics, 2016-03, Vol.17 (1), p.143-143, Article 143

2016

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jmodeltest.org: selection of nucleotide substitution models on the cloud

Bioinformatics, 2014-05, Vol.30 (9), p.1310-1311

2014

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The wall lizards of the Balkan peninsula: Tackling questions at the interface of phylogenomics and population genomics

Molecular phylogenetics and evolution, 2021-06, Vol.159, p.107121-107121, Article 107121

2021

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Prediction of missing sequences and branch lengths in phylogenomic data

Bioinformatics, 2016-05, Vol.32 (9), p.1331-1337

2016

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Cryptic diversity and phylogeographic patterns of Mediodactylus species in the Eastern Mediterranean region

Molecular phylogenetics and evolution, 2024-08, Vol.197, p.108091, Article 108091

2024

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Resolving complex phylogeographic patterns in the Balkan Peninsula using closely related wall-lizard species as a model system

Molecular phylogenetics and evolution, 2018-08, Vol.125, p.100-115

2018

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jmodeltest .org: selection of nucleotide substitution models on the cloud

Bioinformatics (Oxford, England), 2014-05, Vol.30 (9), p.1310-1311

2014

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High-performance computing selection of models of DNA substitution for multicore clusters

The international journal of high performance computing applications, 2014-02, Vol.28 (1), p.112-125

2014

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ProtTest-HPC: Fast Selection of Best-Fit Models of Protein Evolution

Euro-Par 2010 Parallel Processing Workshops, p.177-184

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Adapting Reproducible Research Capabilities to Resilient Distributed Calculations

International journal of grid and high performance computing, 2016-01, Vol.8 (1), p.58-69

2016

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Boosting the Performance of Bayesian Divergence Time Estimation with the Phylogenetic Likelihood Library

2013 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum, 2013, p.539-548

2013

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HPC selection of models of DNA substitution

Proceedings of the 9th International Conference on Computational Methods in Systems Biology, 2011, p.65-72

2011

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A Fault Tolerant Workflow for Reproducible Research

2014 Annual Global Online Conference on Information and Computer Technology, 2014, p.70-75

2014

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Experimental and First-Principles Theoretical Study of Structural and Electronic Properties in Tantalum-Doped In2O3 Semiconductor: Finding a Definitive Hyperfine Interaction Assignment

Journal of physical chemistry. C, 2016-03, Vol.120 (10), p.5640-5650

2016

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A Novel Bacterial Protease Inhibitor Adjuvant in RBD-Based COVID-19 Vaccine Formulations Containing Alum Increases Neutralizing Antibodies, Specific Germinal Center B Cells and Confers Protection Against SARS-CoV-2 Infection in Mice

Frontiers in immunology, 2022-02, Vol.13, p.844837-844837

2022

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Incidence and prognosis of ventilator-associated tracheobronchitis (TAVeM): a multicentre, prospective, observational study

The lancet respiratory medicine, 2015-11, Vol.3 (11), p.859-868

2015

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Experimental and First-Principles Theoretical Study of Structural and Electronic Properties in Tantalum-Doped In 2 O 3 Semiconductor: Finding a Definitive Hyperfine Interaction Assignment

Journal of physical chemistry. C, 2016-03, Vol.120 (10), p.5640-5650

2016

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Impact of immunosuppression on incidence, aetiology and outcome of ventilator-associated lower respiratory tract infections

The European respiratory journal, 2018-03, Vol.51 (3), p.1701656-1701656

2018

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RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models

ProtTest 3: fast selection of best-fit models of protein evolution

jModelTest 2: more models, new heuristics and parallel computing

EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences

The State of Software for Evolutionary Biology

Does the choice of nucleotide substitution models matter topologically?

jmodeltest.org: selection of nucleotide substitution models on the cloud

The wall lizards of the Balkan peninsula: Tackling questions at the interface of phylogenomics and population genomics

Prediction of missing sequences and branch lengths in phylogenomic data

Cryptic diversity and phylogeographic patterns of Mediodactylus species in the Eastern Mediterranean region

Resolving complex phylogeographic patterns in the Balkan Peninsula using closely related wall-lizard species as a model system

jmodeltest .org: selection of nucleotide substitution models on the cloud

High-performance computing selection of models of DNA substitution for multicore clusters

ProtTest-HPC: Fast Selection of Best-Fit Models of Protein Evolution

Adapting Reproducible Research Capabilities to Resilient Distributed Calculations

Boosting the Performance of Bayesian Divergence Time Estimation with the Phylogenetic Likelihood Library

HPC selection of models of DNA substitution

A Fault Tolerant Workflow for Reproducible Research

Experimental and First-Principles Theoretical Study of Structural and Electronic Properties in Tantalum-Doped In2O3 Semiconductor: Finding a Definitive Hyperfine Interaction Assignment

A Novel Bacterial Protease Inhibitor Adjuvant in RBD-Based COVID-19 Vaccine Formulations Containing Alum Increases Neutralizing Antibodies, Specific Germinal Center B Cells and Confers Protection Against SARS-CoV-2 Infection in Mice

Incidence and prognosis of ventilator-associated tracheobronchitis (TAVeM): a multicentre, prospective, observational study

Experimental and First-Principles Theoretical Study of Structural and Electronic Properties in Tantalum-Doped In 2 O 3 Semiconductor: Finding a Definitive Hyperfine Interaction Assignment

Impact of immunosuppression on incidence, aetiology and outcome of ventilator-associated lower respiratory tract infections

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