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What Species Mean: A User's Guide to the Units of Biodiversity

Sigwart, Julia D.

1, 2019

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NewickTreeModifier: A simple web tool to prune and modify Newick trees

The Journal of heredity, 2024-03, Vol.115 (2), p.183-187

2024

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Matching Split Distance for Unrooted Binary Phylogenetic Trees

IEEE/ACM transactions on computational biology and bioinformatics, 2012-01, Vol.9 (1), p.150-160

2012

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Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity

BMC bioinformatics, 2018-05, Vol.19 (1), p.164-164, Article 164

2018

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Comparison of Tree-Child Phylogenetic Networks

IEEE/ACM transactions on computational biology and bioinformatics, 2009-10, Vol.6 (4), p.552-569

2009

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PhyloMissForest: a random forest framework to construct phylogenetic trees with missing data

BMC genomics, 2022-05, Vol.23 (1), p.377-377, Article 377

2022

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A new fast method for inferring multiple consensus trees using k-medoids

BMC evolutionary biology, 2018-04, Vol.18 (1), p.48

2018

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Molecular identification of new circulating Hyalomma asiaticum asiaticum from sheep and goats in Duhok governorate, Iraq

Iraqi journal of veterinary sciences, 2021, Vol.35 (1), p.79-83

2021

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Morphological and molecular data support recognition of Spergularia quartzicola (Caryophyllaceae) as a new species endemic to South Africa

Plant biosystems, 2022-03, Vol.156 (2), p.506-514

2022

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Generalization of Phylogenetic Matching Metrics with Experimental Tests of Practical Advantages

Journal of computational biology, 2023-03, Vol.30 (3), p.261-276

2023

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Complete viral protein coding genes NS1 and VP1 sequences and phylogenetic analysis of a novel recombinant Mink Enteritis Virus isolated in China

Indian journal of animal sciences, 2023-11, Vol.93 (11)

2023

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Phylogenetic tree construction using trinucleotide usage profile (TUP)

BMC bioinformatics, 2016-10, Vol.17 (Suppl 13), p.381-381, Article 381

2016

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Spaces of phylogenetic networks from generalized nearest-neighbor interchange operations

Journal of mathematical biology, 2016-02, Vol.72 (3), p.699-725

2016

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A Metric for Phylogenetic Trees Based on Matching

IEEE/ACM transactions on computational biology and bioinformatics, 2012-07, Vol.9 (4), p.1014-1022

2012

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Multi Step Selection in Ig H Chains is Initially Focused on CDR3 and Then on Other CDR Regions

Frontiers in immunology, 2013-01, Vol.4, p.274-274

2013

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A SNP-based phylogenetic analysis of Corynebacterium diphtheriae in Malaysia

BMC research notes, 2018-10, Vol.11 (1), p.760-8, Article 760

2018

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Morphological study and molecular epidemiology of Anisakis larvae in mackerel fish

Asian Pacific journal of tropical medicine, 2021-05, Vol.14 (5), p.214-222

2021

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Novel Molecular Synapomorphies Demarcate Different Main Groups/Subgroups of Plasmodium and Piroplasmida Species Clarifying Their Evolutionary Relationships

Genes, 2019-06, Vol.10 (7), p.490

2019

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GENETIC CHARACTERIZATION IN FOUR INDONESIAN CATTLE BREEDS INFERRED FROM ILLUMINA PARENTAGE SNP MARKERS

Iraqi journal of agricultural science, 2024-01, Vol.55 (Special Issue), p.284-292

2024

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Testing the effectiveness of rbcLa DNA-barcoding for species discrimination in tropical montane cloud forest vascular plants (Oaxaca, Mexico) using BLAST, genetic distance, and tree-based methods

PeerJ (San Francisco, CA), 2022-08, Vol.10, p.e13771-e13771, Article e13771

2022

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Biochemical and phylogenetic networks-II: X-trees and phylogenetic trees

Journal of mathematical chemistry, 2021, Vol.59 (3), p.699-718

2021

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Ranking Top- k Trees in Tree-Based Phylogenetic Networks

IEEE/ACM transactions on computational biology and bioinformatics, 2023-05, Vol.20 (3), p.2349-2355

2023

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Analysis of Phylogenetics and Evolution with R

Paradis, Emmanuel

1. Aufl., 2006

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Inferring explicit weighted consensus networks to represent alternative evolutionary histories

BMC evolutionary biology, 2013-12, Vol.13, p.274

2013

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Bioinformatics analysis and construction of phylogenetic tree of aquaporins from Echinococcus granulosus

Parasitology research (1987), 2016-09, Vol.115 (9), p.3499-3511

2016

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What Species Mean: A User's Guide to the Units of Biodiversity

NewickTreeModifier: A simple web tool to prune and modify Newick trees

Matching Split Distance for Unrooted Binary Phylogenetic Trees

Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity

Comparison of Tree-Child Phylogenetic Networks

PhyloMissForest: a random forest framework to construct phylogenetic trees with missing data

A new fast method for inferring multiple consensus trees using k-medoids

Molecular identification of new circulating Hyalomma asiaticum asiaticum from sheep and goats in Duhok governorate, Iraq

Morphological and molecular data support recognition of Spergularia quartzicola (Caryophyllaceae) as a new species endemic to South Africa

Generalization of Phylogenetic Matching Metrics with Experimental Tests of Practical Advantages

Complete viral protein coding genes NS1 and VP1 sequences and phylogenetic analysis of a novel recombinant Mink Enteritis Virus isolated in China

Phylogenetic tree construction using trinucleotide usage profile (TUP)

Spaces of phylogenetic networks from generalized nearest-neighbor interchange operations

A Metric for Phylogenetic Trees Based on Matching

Multi Step Selection in Ig H Chains is Initially Focused on CDR3 and Then on Other CDR Regions

A SNP-based phylogenetic analysis of Corynebacterium diphtheriae in Malaysia

Morphological study and molecular epidemiology of Anisakis larvae in mackerel fish

Novel Molecular Synapomorphies Demarcate Different Main Groups/Subgroups of Plasmodium and Piroplasmida Species Clarifying Their Evolutionary Relationships

GENETIC CHARACTERIZATION IN FOUR INDONESIAN CATTLE BREEDS INFERRED FROM ILLUMINA PARENTAGE SNP MARKERS

Testing the effectiveness of rbcLa DNA-barcoding for species discrimination in tropical montane cloud forest vascular plants (Oaxaca, Mexico) using BLAST, genetic distance, and tree-based methods

Biochemical and phylogenetic networks-II: X-trees and phylogenetic trees

Ranking Top- k Trees in Tree-Based Phylogenetic Networks

Analysis of Phylogenetics and Evolution with R

Inferring explicit weighted consensus networks to represent alternative evolutionary histories

Bioinformatics analysis and construction of phylogenetic tree of aquaporins from Echinococcus granulosus

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