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PRROC: computing and visualizing precision-recall and receiver operating characteristic curves in R

Bioinformatics, 2015-08, Vol.31 (15), p.2595-2597

2015

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ROCR: visualizing classifier performance in R

Bioinformatics, 2005-10, Vol.21 (20), p.3940-3941

2005

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Compound image segmentation of published biomedical figures

Bioinformatics, 2018-04, Vol.34 (7), p.1192-1199

2018

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Attention-based Knowledge Graph Representation Learning for Predicting Drug-drug Interactions

Briefings in bioinformatics, 2022-05, Vol.23 (3)

2022

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Evolutionary Footprints Reveal Insights into Plant MicroRNA Biogenesis

The Plant cell, 2017-06, Vol.29 (6), p.1248-1261

2017

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A visual analytics approach for pattern-recognition in patient-generated data

Journal of the American Medical Informatics Association : JAMIA, 2018-10, Vol.25 (10), p.1366-1374

2018

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Quantifying the impact of health IT implementations on clinical workflow: a new methodological perspective

Journal of the American Medical Informatics Association : JAMIA, 2010-07, Vol.17 (4), p.454-461

2010

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Mining coherent dense subgraphs across massive biological networks for functional discovery

Bioinformatics, 2005-06, Vol.21 (suppl-1), p.i213-i221

2005

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TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments

Bioinformatics, 2004-07, Vol.20 (11), p.1806-1807

2004

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SAGA: a subgraph matching tool for biological graphs

Bioinformatics, 2007-01, Vol.23 (2), p.232-239

2007

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EDGE: extraction and analysis of differential gene expression

Bioinformatics, 2006-02, Vol.22 (4), p.507-508

2006

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PINE-SPARKY: graphical interface for evaluating automated probabilistic peak assignments in protein NMR spectroscopy

Bioinformatics, 2009-08, Vol.25 (16), p.2085-2087

2009

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Detecting periodic patterns in unevenly spaced gene expression time series using Lomb–Scargle periodograms

Bioinformatics, 2006-02, Vol.22 (3), p.310-316

2006

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Tight Clustering: A Resampling-Based Approach for Identifying Stable and Tight Patterns in Data

Biometrics, 2005-03, Vol.61 (1), p.10-16

2005

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Sorting points into neighborhoods (SPIN): data analysis and visualization by ordering distance matrices

Bioinformatics, 2005-05, Vol.21 (10), p.2301-2308

2005

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Highly accelerated feature detection in proteomics data sets using modern graphics processing units

Bioinformatics, 2009-08, Vol.25 (15), p.1937-1943

2009

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Identifying functional co-activation patterns in neuroimaging studies via poisson graphical models

Biometrics, 2014-12, Vol.70 (4), p.812-822

2014

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ProClust: improved clustering of protein sequences with an extended graph-based approach

Bioinformatics (Oxford, England), 2002-10, Vol.18 Suppl 2 (suppl_2), p.S182-S191

2002

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BiVisu: software tool for bicluster detection and visualization

Bioinformatics, 2007-09, Vol.23 (17), p.2342-2344

2007

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INCA: synonymous codon usage analysis and clustering by means of self-organizing map

Bioinformatics, 2004-09, Vol.20 (14), p.2329-2330

2004

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Bayesian methods in bioinformatics and computational systems biology

Briefings in bioinformatics, 2007-03, Vol.8 (2), p.109-116

Wilkinson, Darren J

2007

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massXpert 2: a cross-platform software environment for polymer chemistry modelling and simulation/analysis of mass spectrometric data

Bioinformatics, 2009-10, Vol.25 (20), p.2741-2742

Rusconi, Filippo

2009

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GeneCluster 2.0: an advanced toolset for bioarray analysis

Bioinformatics, 2004-07, Vol.20 (11), p.1797-1798

2004

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DASS-GUI: a user interface for identification and analysis of significant patterns in non-sequential data

Bioinformatics, 2010-04, Vol.26 (7), p.987-989

2010

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Automated classification of alternative splicing and transcriptional initiation and construction of visual database of classified patterns

Bioinformatics, 2006-05, Vol.22 (10), p.1211-1216

2006

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PRROC: computing and visualizing precision-recall and receiver operating characteristic curves in R

ROCR: visualizing classifier performance in R

Compound image segmentation of published biomedical figures

Attention-based Knowledge Graph Representation Learning for Predicting Drug-drug Interactions

Evolutionary Footprints Reveal Insights into Plant MicroRNA Biogenesis

A visual analytics approach for pattern-recognition in patient-generated data

Quantifying the impact of health IT implementations on clinical workflow: a new methodological perspective

Mining coherent dense subgraphs across massive biological networks for functional discovery

TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments

SAGA: a subgraph matching tool for biological graphs

EDGE: extraction and analysis of differential gene expression

PINE-SPARKY: graphical interface for evaluating automated probabilistic peak assignments in protein NMR spectroscopy

Detecting periodic patterns in unevenly spaced gene expression time series using Lomb–Scargle periodograms

Tight Clustering: A Resampling-Based Approach for Identifying Stable and Tight Patterns in Data

Sorting points into neighborhoods (SPIN): data analysis and visualization by ordering distance matrices

Highly accelerated feature detection in proteomics data sets using modern graphics processing units

Identifying functional co-activation patterns in neuroimaging studies via poisson graphical models

ProClust: improved clustering of protein sequences with an extended graph-based approach

BiVisu: software tool for bicluster detection and visualization

INCA: synonymous codon usage analysis and clustering by means of self-organizing map

Bayesian methods in bioinformatics and computational systems biology

massXpert 2: a cross-platform software environment for polymer chemistry modelling and simulation/analysis of mass spectrometric data

GeneCluster 2.0: an advanced toolset for bioarray analysis

DASS-GUI: a user interface for identification and analysis of significant patterns in non-sequential data

Automated classification of alternative splicing and transcriptional initiation and construction of visual database of classified patterns

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