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Reproductive phasiRNAs in grasses are compositionally distinct from other classes of small RNAs

The New phytologist, 2018-11, Vol.220 (3), p.851-864

2018

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Protein (multi-)location prediction: utilizing interdependencies via a generative model

Bioinformatics, 2015-06, Vol.31 (12), p.i365-i374

2015

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SherLoc2: A High-Accuracy Hybrid Method for Predicting Subcellular Localization of Proteins

Journal of proteome research, 2009-11, Vol.8 (11), p.5363-5366

2009

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Chronic Kidney Disease stratification using office visit records: Handling data imbalance via hierarchical meta-classification

BMC medical informatics and decision making, 2018-12, Vol.18 (Suppl 4), p.125-125, Article 125

2018

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Stochastic Sequential Modeling: Toward Improved Prostate Cancer Diagnosis Through Temporal-Ultrasound

Annals of biomedical engineering, 2021-02, Vol.49 (2), p.573-584

2021

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New directions in biomedical text annotation: definitions, guidelines and corpus construction

BMC bioinformatics, 2006-07, Vol.7 (1), p.356-356, Article 356

2006

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Correction to: Stochastic Sequential Modeling: Toward Improved Prostate Cancer Diagnosis Through Temporal-Ultrasound

Annals of biomedical engineering, 2020-12, Vol.48 (12), p.3025-3025

2020

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Mining the biomedical literature in the genomic era: an overview

Journal of computational biology, 2003-01, Vol.10 (6), p.821-855

2003

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Combining multi-species genomic data for microRNA identification using a Naïve Bayes classifier

Bioinformatics, 2006-06, Vol.22 (11), p.1325-1334

2006

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SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data

Bioinformatics, 2007-06, Vol.23 (11), p.1410-1417

2007

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Domain-Informed Neural Networks for Interaction Localization Within Astroparticle Experiments

Frontiers in artificial intelligence, 2022-06, Vol.5, p.832909-832909

2022

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How to get the most out of your curation effort

PLoS computational biology, 2009-05, Vol.5 (5), p.e1000391-e1000391

2009

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Figure and caption extraction from biomedical documents

Bioinformatics, 2019-11, Vol.35 (21), p.4381-4388

2019

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Protein function prediction using text-based features extracted from the biomedical literature: the CAFA challenge

BMC bioinformatics, 2013-02, Vol.14 Suppl 3 (Suppl 3), p.S14-S14, Article S14

2013

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Text mining for biology--the way forward: opinions from leading scientists

Genome biology, 2008-01, Vol.9 Suppl 2 (Suppl 2), p.S7-S7

2008

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Protein (Multi-)Location Prediction: Using Location Inter-dependencies in a Probabilistic Framework

Algorithms in Bioinformatics, p.3-17

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Discovering semantic features in the literature: a foundation for building functional associations

BMC bioinformatics, 2006-01, Vol.7 (1), p.41-41, Article 41

2006

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Whole-Genome Shotgun Assembly and Comparison of Human Genome Assemblies

Proceedings of the National Academy of Sciences - PNAS, 2004-02, Vol.101 (7), p.1916-1921

2004

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F-SNP: computationally predicted functional SNPs for disease association studies

Nucleic acids research, 2008-01, Vol.36 (Database issue), p.D820

2008

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Correction: A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature

BMC bioinformatics, 2012-07, Vol.13 (1), p.180-180

2012

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Compound image segmentation of published biomedical figures

Bioinformatics, 2018-04, Vol.34 (7), p.1192-1199

2018

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Functionally informative tag SNP selection using a pareto-optimal approach: playing the game of life

BMC bioinformatics, 2009-10, Vol.10 (Suppl 13), p.O5-O5, Article O5

2009

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Text as data: Using text-based features for proteins representation and for computational prediction of their characteristics

Methods (San Diego, Calif.), 2015-03, Vol.74, p.54-64

2015

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Co-occurrence of medical conditions: Exposing patterns through probabilistic topic modeling of snomed codes

Journal of biomedical informatics, 2018-06, Vol.82, p.31-40

2018

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Segmenting Compound Biomedical Figures into Their Constituent Panels

Experimental IR Meets Multilinguality, Multimodality, and Interaction, 2017-09, p.199-210

2017

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Reproductive phasiRNAs in grasses are compositionally distinct from other classes of small RNAs

Protein (multi-)location prediction: utilizing interdependencies via a generative model

SherLoc2: A High-Accuracy Hybrid Method for Predicting Subcellular Localization of Proteins

Chronic Kidney Disease stratification using office visit records: Handling data imbalance via hierarchical meta-classification

Stochastic Sequential Modeling: Toward Improved Prostate Cancer Diagnosis Through Temporal-Ultrasound

New directions in biomedical text annotation: definitions, guidelines and corpus construction

Correction to: Stochastic Sequential Modeling: Toward Improved Prostate Cancer Diagnosis Through Temporal-Ultrasound

Mining the biomedical literature in the genomic era: an overview

Combining multi-species genomic data for microRNA identification using a Naïve Bayes classifier

SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data

Domain-Informed Neural Networks for Interaction Localization Within Astroparticle Experiments

How to get the most out of your curation effort

Figure and caption extraction from biomedical documents

Protein function prediction using text-based features extracted from the biomedical literature: the CAFA challenge

Text mining for biology--the way forward: opinions from leading scientists

Protein (Multi-)Location Prediction: Using Location Inter-dependencies in a Probabilistic Framework

Discovering semantic features in the literature: a foundation for building functional associations

Whole-Genome Shotgun Assembly and Comparison of Human Genome Assemblies

F-SNP: computationally predicted functional SNPs for disease association studies

Correction: A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature

Compound image segmentation of published biomedical figures

Functionally informative tag SNP selection using a pareto-optimal approach: playing the game of life

Text as data: Using text-based features for proteins representation and for computational prediction of their characteristics

Co-occurrence of medical conditions: Exposing patterns through probabilistic topic modeling of snomed codes

Segmenting Compound Biomedical Figures into Their Constituent Panels

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