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Mining from transcriptomes: 315 single‐copy orthologous genes concatenated for the phylogenetic analyses of Orchidaceae

Ecology and evolution, 2015-09, Vol.5 (17), p.3800-3807

2015

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Rapid genome reshaping by multiple-gene loss after whole-genome duplication in teleost fish suggested by mathematical modeling

Proceedings of the National Academy of Sciences - PNAS, 2015-12, Vol.112 (48), p.14918-14923

2015

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De novo transcriptome assembly, annotation and SSR mining data of Hellula undalis (Fabr.) (Lepidoptera: Pyralidae), the cabbage webworm

Journal of Genetic Engineering and Biotechnology, 2024-09, Vol.22 (3), p.100393, Article 100393

2024

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Refinement of rice blast disease resistance QTLs and gene networks through meta-QTL analysis

Scientific reports, 2024-07, Vol.14 (1), p.16458-17, Article 16458

2024

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Is Phylotranscriptomics as Reliable as Phylogenomics?

Molecular biology and evolution, 2020-12, Vol.37 (12), p.3672-3683

2020

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Identification and expression analysis of non-photosynthetic Rubisco small subunit, OsRbcS1-like genes in plants

Plant gene, 2016-12, Vol.8, p.26-31

2016

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Convergent degeneration of olfactory receptor gene repertoires in marine mammals

BMC genomics, 2019-12, Vol.20 (1), p.977-977, Article 977

2019

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Functional Divergence in Orthologous Transcription Factors: Insights from AtCBF2/3/1 and OsDREB1C

Molecular biology and evolution, 2024-05, Vol.41 (5)

2024

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Cysteine Enrichment Mediates Co-Option of Uricase in Reptilian Skin and Transition to Uricotelism

Molecular biology and evolution, 2023-09, Vol.40 (9)

2023

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G-quadruplex motifs are functionally conserved in cis-regulatory regions of pathogenic bacteria: An in-silico evaluation

Biochimie, 2021-05, Vol.184, p.40-51

2021

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A metaanalysis of bat phylogenetics and positive selection based on genomes and transcriptomes from 18 species

Proceedings of the National Academy of Sciences - PNAS, 2019-06, Vol.116 (23), p.11351-11360

2019

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The role of genetics in mainstreaming the production of new and orphan crops to diversify food systems and support human nutrition

The New phytologist, 2019-10, Vol.224 (1), p.37-54

2019

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De novo Assembly and Genome-Wide SNP Discovery in Rohu Carp, Labeo rohita

Frontiers in genetics, 2020-04, Vol.11, p.386-386

2020

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Prediction and analysis of cis-regulatory elements in Dorsal and Ventral patterning genes of Tribolium castaneum and its comparison with Drosophila melanogaster

Molecular and cellular biochemistry, 2024, Vol.479 (1), p.109-125

2024

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Overexpression of three orthologous glutathione S-transferases from Populus increased salt and drought resistance in Arabidopsis

Biochemical systematics and ecology, 2019-04, Vol.83, p.57-61

2019

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Taxonomic revision of Blumeria based on multi-gene DNA sequences, host preferences and morphology

Mycoscience, 2021/03/13, pp.MYC525

2021

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Variability of Bacterial Essential Genes Among Closely Related Bacteria: The Case of Escherichia coli

Frontiers in microbiology, 2018-05, Vol.9, p.1059-1059

2018

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Genome-wide analysis of intermuscular bone development reveals changes of key genes expression and signaling pathways in blunt snout bream (Megalobrama amblycephala)

Genomics (San Diego, Calif.), 2021-01, Vol.113 (1), p.654-663

2021

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A Phylogenetic Framework to Simulate Synthetic Interspecies RNA-Seq Data

Molecular biology and evolution, 2023-01, Vol.40 (1), p.1-14

2023

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Micro-Evolution Analysis Reveals Diverged Patterns of Polyol Transporters in Seven Gramineae Crops

Frontiers in genetics, 2020-06, Vol.11, p.565

2020

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The Tomato Genome Encodes SPCH, MUTE, and FAMA Candidates That Can Replace the Endogenous Functions of Their Arabidopsis Orthologs

Frontiers in plant science, 2019-10, Vol.10, p.1300-1300

2019

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Divergence of Noncoding Regulatory Elements Explains Gene-Phenotype Differences between Human and Mouse Orthologous Genes

Molecular biology and evolution, 2018-07, Vol.35 (7), p.1653-1667

2018

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Identification and Functional Characterization of Argonaute (Ago) Proteins in Insect Genomes

Methods in molecular biology (Clifton, N.J.), 2022, Vol.2360, p.9

2022

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Identification of genes involved in fruit development/ripening in Capsicum and development of functional markers

Genomics (San Diego, Calif.), 2019-12, Vol.111 (6), p.1913-1922

2019

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The Impact of Mmu17 Non-Hsa21 Orthologous Genes in the Ts65Dn Mouse Model of Down Syndrome: The Gold Standard Refuted

Biological psychiatry (1969), 2023-07, Vol.94 (1), p.84-97

2023

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Mining from transcriptomes: 315 single‐copy orthologous genes concatenated for the phylogenetic analyses of Orchidaceae

Rapid genome reshaping by multiple-gene loss after whole-genome duplication in teleost fish suggested by mathematical modeling

De novo transcriptome assembly, annotation and SSR mining data of Hellula undalis (Fabr.) (Lepidoptera: Pyralidae), the cabbage webworm

Refinement of rice blast disease resistance QTLs and gene networks through meta-QTL analysis

Is Phylotranscriptomics as Reliable as Phylogenomics?

Identification and expression analysis of non-photosynthetic Rubisco small subunit, OsRbcS1-like genes in plants

Convergent degeneration of olfactory receptor gene repertoires in marine mammals

Functional Divergence in Orthologous Transcription Factors: Insights from AtCBF2/3/1 and OsDREB1C

Cysteine Enrichment Mediates Co-Option of Uricase in Reptilian Skin and Transition to Uricotelism

G-quadruplex motifs are functionally conserved in cis-regulatory regions of pathogenic bacteria: An in-silico evaluation

A metaanalysis of bat phylogenetics and positive selection based on genomes and transcriptomes from 18 species

The role of genetics in mainstreaming the production of new and orphan crops to diversify food systems and support human nutrition

De novo Assembly and Genome-Wide SNP Discovery in Rohu Carp, Labeo rohita

Prediction and analysis of cis-regulatory elements in Dorsal and Ventral patterning genes of Tribolium castaneum and its comparison with Drosophila melanogaster

Overexpression of three orthologous glutathione S-transferases from Populus increased salt and drought resistance in Arabidopsis

Taxonomic revision of Blumeria based on multi-gene DNA sequences, host preferences and morphology

Variability of Bacterial Essential Genes Among Closely Related Bacteria: The Case of Escherichia coli

Genome-wide analysis of intermuscular bone development reveals changes of key genes expression and signaling pathways in blunt snout bream (Megalobrama amblycephala)

A Phylogenetic Framework to Simulate Synthetic Interspecies RNA-Seq Data

Micro-Evolution Analysis Reveals Diverged Patterns of Polyol Transporters in Seven Gramineae Crops

The Tomato Genome Encodes SPCH, MUTE, and FAMA Candidates That Can Replace the Endogenous Functions of Their Arabidopsis Orthologs

Divergence of Noncoding Regulatory Elements Explains Gene-Phenotype Differences between Human and Mouse Orthologous Genes

Identification and Functional Characterization of Argonaute (Ago) Proteins in Insect Genomes

Identification of genes involved in fruit development/ripening in Capsicum and development of functional markers

The Impact of Mmu17 Non-Hsa21 Orthologous Genes in the Ts65Dn Mouse Model of Down Syndrome: The Gold Standard Refuted

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