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GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

Genome Biology, 2020-09, Vol.21 (1), p.241-241, Article 241

2020

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MicroRNAs from the parasitic plant Cuscuta campestris target host messenger RNAs

Nature (London), 2018-01, Vol.553 (7686), p.82-85

2018

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The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

Plant molecular biology, 2011-07, Vol.76 (3-5), p.273-297

2011

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Genomic-scale exchange of mRNA between a parasitic plant and its hosts

Science (American Association for the Advancement of Science), 2014-08, Vol.345 (6198), p.808-811

2014

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Mechanistic model of evolutionary rate variation en route to a nonphotosynthetic lifestyle in plants

Proceedings of the National Academy of Sciences - PNAS, 2016-08, Vol.113 (32), p.9045-9050

2016

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Local Auxin Biosynthesis Mediated by a YUCCA Flavin Monooxygenase Regulates Haustorium Development in the Parasitic Plant Phtheirospermum japonicum

The Plant cell, 2016-08, Vol.28 (8), p.1795-1814

2016

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RNA viruses in hymenopteran pollinators: evidence of inter-Taxa virus transmission via pollen and potential impact on non-Apis hymenopteran species

PloS one, 2010-12, Vol.5 (12), p.e14357

2010

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Single-copy nuclear genes place haustorial Hydnoraceae within piperales and reveal a cretaceous origin of multiple parasitic angiosperm lineages

PloS one, 2013-11, Vol.8 (11), p.e79204-e79204

2013

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Genomics of sorghum local adaptation to a parasitic plant

Proceedings of the National Academy of Sciences - PNAS, 2020-02, Vol.117 (8), p.4243-4251

2020

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Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome

PloS one, 2016-01, Vol.11 (1), p.e0146062-e0146062

2016

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PlantTribes2: Tools for comparative gene family analysis in plant genomics

Frontiers in plant science, 2023-01, Vol.13, p.1011199-1011199

2023

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FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar

Proceedings of the National Academy of Sciences - PNAS, 2011-06, Vol.108 (26), p.10756-10761

2011

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De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum

BMC genomics, 2011-02, Vol.12 (1), p.99-99, Article 99

2011

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Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

Proceedings of the National Academy of Sciences - PNAS, 2007-12, Vol.104 (49), p.19369-19374

2007

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Transcriptomes of the Parasitic Plant Family Orobanchaceae Reveal Surprising Conservation of Chlorophyll Synthesis

Current biology, 2011-12, Vol.21 (24), p.2098-2104

2011

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Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels

BMC evolutionary biology, 2010-02, Vol.10, p.61

2010

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Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism

BMC plant biology, 2019-05, Vol.19 (1), p.196-196, Article 196

2019

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Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth

The Plant journal : for cell and molecular biology, 2007-06, Vol.50 (5), p.873-885

2007

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Compensatory sequence variation between trans -species small RNAs and their target sites

eLife, 2019-12, Vol.8

2019

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Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes

PloS one, 2012-11, Vol.7 (11), p.e50226-e50226

2012

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Comparison of next generation sequencing technologies for transcriptome characterization

BMC genomics, 2009-08, Vol.10 (1), p.347-347, Article 347

2009

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Conservation and divergence of microRNAs in Populus

BMC genomics, 2007-12, Vol.8 (1), p.481-481

2007

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Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants

BMC evolutionary biology, 2007-12, Vol.7, p.248

2007

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Widespread genome duplications throughout the history of flowering plants

Genome Research, 2006-06, Vol.16 (6), p.738-749

2006

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Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes

Frontiers in plant science, 2022-11, Vol.13, p.876779-876779

2022

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GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

MicroRNAs from the parasitic plant Cuscuta campestris target host messenger RNAs

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

Genomic-scale exchange of mRNA between a parasitic plant and its hosts

Mechanistic model of evolutionary rate variation en route to a nonphotosynthetic lifestyle in plants

Local Auxin Biosynthesis Mediated by a YUCCA Flavin Monooxygenase Regulates Haustorium Development in the Parasitic Plant Phtheirospermum japonicum

RNA viruses in hymenopteran pollinators: evidence of inter-Taxa virus transmission via pollen and potential impact on non-Apis hymenopteran species

Single-copy nuclear genes place haustorial Hydnoraceae within piperales and reveal a cretaceous origin of multiple parasitic angiosperm lineages

Genomics of sorghum local adaptation to a parasitic plant

Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome

PlantTribes2: Tools for comparative gene family analysis in plant genomics

FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar

De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum

Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

Transcriptomes of the Parasitic Plant Family Orobanchaceae Reveal Surprising Conservation of Chlorophyll Synthesis

Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels

Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism

Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth

Compensatory sequence variation between trans -species small RNAs and their target sites

Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes

Comparison of next generation sequencing technologies for transcriptome characterization

Conservation and divergence of microRNAs in Populus

Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants

Widespread genome duplications throughout the history of flowering plants

Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes

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