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Improving AutoDock Vina Using Random Forest: The Growing Accuracy of Binding Affinity Prediction by the Effective Exploitation of Larger Data Sets

Molecular informatics, 2015-02, Vol.34 (2-3), p.115-126

2015

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Long non-coding RNA pairs to assist in diagnosing sepsis

BMC genomics, 2021-04, Vol.22 (1), p.275-275, Article 275

2021

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Classical scoring functions for docking are unable to exploit large volumes of structural and interaction data

Bioinformatics, 2019-10, Vol.35 (20), p.3989-3995

2019

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Correcting the impact of docking pose generation error on binding affinity prediction

BMC bioinformatics, 2016-09, Vol.17 (Suppl 11), p.308-308, Article 308

2016

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istar: a web platform for large-scale protein-ligand docking

PloS one, 2014-01, Vol.9 (1), p.e85678-e85678

2014

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Low-Quality Structural and Interaction Data Improves Binding Affinity Prediction via Random Forest

Molecules (Basel, Switzerland), 2015-06, Vol.20 (6), p.10947-10962

2015

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iview: an interactive WebGL visualizer for protein-ligand complex

BMC bioinformatics, 2014-02, Vol.15 (1), p.56-56, Article 56

2014

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In Silico Identification and In Vitro and In Vivo Validation of Anti-Psychotic Drug Fluspirilene as a Potential CDK2 Inhibitor and a Candidate Anti-Cancer Drug

PloS one, 2015-07, Vol.10 (7), p.e0132072-e0132072

2015

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MolTarPred: A web tool for comprehensive target prediction with reliability estimation

Chemical biology & drug design, 2019-07, Vol.94 (1), p.1390-1401

2019

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Whole transcriptome analysis reveals non-coding RNA's competing endogenous gene pairs as novel form of motifs in serous ovarian cancer

Computers in biology and medicine, 2022-09, Vol.148, p.105881-105881, Article 105881

2022

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Old drug, new indication: Olsalazine sodium reduced serum uric acid levels in mice via inhibiting xanthine oxidoreductase activity

Journal of pharmacological sciences, 2017-11, Vol.135 (3), p.114-120

2017

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The Impact of Protein Structure and Sequence Similarity on the Accuracy of Machine-Learning Scoring Functions for Binding Affinity Prediction

Biomolecules (Basel, Switzerland), 2018-03, Vol.8 (1), p.12

2018

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Discovery of vanoxerine dihydrochloride as a CDK2/4/6 triple-inhibitor for the treatment of human hepatocellular carcinoma

Molecular medicine (Cambridge, Mass.), 2021-02, Vol.27 (1), p.15-15, Article 15

2021

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Genome-Wide Search for SNP Interactions in GWAS Data: Algorithm, Feasibility, Replication Using Schizophrenia Datasets

Frontiers in genetics, 2020-08, Vol.11, p.1003-1003

2020

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Discovery of rafoxanide as a dual CDK4/6 inhibitor for the treatment of skin cancer

Oncology reports, 2018-09, Vol.40 (3), p.1592-1600

2018

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Improvement of community monitoring network data for urban heat island investigation in Hong Kong

Urban climate, 2021-05, Vol.37, p.100852, Article 100852

2021

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Econazole nitrate inhibits PI3K activity and promotes apoptosis in lung cancer cells

Scientific reports, 2017-12, Vol.7 (1), p.17987-17987, Article 17987

2017

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Evaluating the Consistency of Gene Methylation in Liver Cancer Using Bisulfite Sequencing Data

Frontiers in cell and developmental biology, 2021-04, Vol.9, p.671302-671302

2021

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Substituting random forest for multiple linear regression improves binding affinity prediction of scoring functions: Cyscore as a case study

BMC bioinformatics, 2014-08, Vol.15 (1), p.291-291, Article 291

2014

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Identification of Clinically Approved Drugs Indacaterol and Canagliflozin for Repurposing to Treat Epidermal Growth Factor Tyrosine Kinase Inhibitor-Resistant Lung Cancer

Frontiers in oncology, 2017-11, Vol.7, p.288-288

2017

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Discovery of a New CDK4/6 and PI3K/AKT Multiple Kinase Inhibitor Aminoquinol for the Treatment of Hepatocellular Carcinoma

Frontiers in pharmacology, 2021-07, Vol.12, p.691769-691769

2021

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In silico prediction and in vitro and in vivo validation of acaricide fluazuron as a potential inhibitor of FGFR3 and a candidate anticancer drug for bladder carcinoma

Chemical biology & drug design, 2017-04, Vol.89 (4), p.505-513

2017

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Improving bulk RNA-seq classification by transferring gene signature from single cells in acute myeloid leukemia

Briefings in bioinformatics, 2022-03, Vol.23 (2)

2022

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bvnGPS: a generalizable diagnostic model for acute bacterial and viral infection using integrative host transcriptomics and pretrained neural networks

Bioinformatics (Oxford, England), 2023-03, Vol.39 (3)

2023

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Predicting associations among drugs, targets and diseases by tensor decomposition for drug repositioning

BMC bioinformatics, 2019-12, Vol.20 (Suppl 26), p.628-628, Article 628

2019

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Improving AutoDock Vina Using Random Forest: The Growing Accuracy of Binding Affinity Prediction by the Effective Exploitation of Larger Data Sets

Long non-coding RNA pairs to assist in diagnosing sepsis

Classical scoring functions for docking are unable to exploit large volumes of structural and interaction data

Correcting the impact of docking pose generation error on binding affinity prediction

istar: a web platform for large-scale protein-ligand docking

Low-Quality Structural and Interaction Data Improves Binding Affinity Prediction via Random Forest

iview: an interactive WebGL visualizer for protein-ligand complex

In Silico Identification and In Vitro and In Vivo Validation of Anti-Psychotic Drug Fluspirilene as a Potential CDK2 Inhibitor and a Candidate Anti-Cancer Drug

MolTarPred: A web tool for comprehensive target prediction with reliability estimation

Whole transcriptome analysis reveals non-coding RNA's competing endogenous gene pairs as novel form of motifs in serous ovarian cancer

Old drug, new indication: Olsalazine sodium reduced serum uric acid levels in mice via inhibiting xanthine oxidoreductase activity

The Impact of Protein Structure and Sequence Similarity on the Accuracy of Machine-Learning Scoring Functions for Binding Affinity Prediction

Discovery of vanoxerine dihydrochloride as a CDK2/4/6 triple-inhibitor for the treatment of human hepatocellular carcinoma

Genome-Wide Search for SNP Interactions in GWAS Data: Algorithm, Feasibility, Replication Using Schizophrenia Datasets

Discovery of rafoxanide as a dual CDK4/6 inhibitor for the treatment of skin cancer

Improvement of community monitoring network data for urban heat island investigation in Hong Kong

Econazole nitrate inhibits PI3K activity and promotes apoptosis in lung cancer cells

Evaluating the Consistency of Gene Methylation in Liver Cancer Using Bisulfite Sequencing Data

Substituting random forest for multiple linear regression improves binding affinity prediction of scoring functions: Cyscore as a case study

Identification of Clinically Approved Drugs Indacaterol and Canagliflozin for Repurposing to Treat Epidermal Growth Factor Tyrosine Kinase Inhibitor-Resistant Lung Cancer

Discovery of a New CDK4/6 and PI3K/AKT Multiple Kinase Inhibitor Aminoquinol for the Treatment of Hepatocellular Carcinoma

In silico prediction and in vitro and in vivo validation of acaricide fluazuron as a potential inhibitor of FGFR3 and a candidate anticancer drug for bladder carcinoma

Improving bulk RNA-seq classification by transferring gene signature from single cells in acute myeloid leukemia

bvnGPS: a generalizable diagnostic model for acute bacterial and viral infection using integrative host transcriptomics and pretrained neural networks

Predicting associations among drugs, targets and diseases by tensor decomposition for drug repositioning

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