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String Processing and Information Retrieval: 28th International Symposium, SPIRE 2021, Lille, France, October 4-6, 2021, Proceedings

1st ed. 2021., 2021

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Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics

PloS one, 2017-01, Vol.12 (1), p.e0169563-e0169563

2017

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SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

Bioinformatics, 2012-12, Vol.28 (24), p.3211-3217

2012

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Efficient approximations of RNA kinetics landscape using non-redundant sampling

Bioinformatics (Oxford, England), 2017-07, Vol.33 (14), p.i283-i292

2017

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Algorithms in Bioinformatics: 15th International Workshop, WABI 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings

1, 2015

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MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes

Bioinformatics, 2018-02, Vol.34 (4), p.585-591

2018

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Porechop_ABI: discovering unknown adapters in Oxford Nanopore Technology sequencing reads for downstream trimming

Bioinformatics advances, 2023, Vol.3 (1), p.vbac085-vbac085

2023

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miRkwood: a tool for the reliable identification of microRNAs in plant genomes

BMC genomics, 2019-06, Vol.20 (1), p.532-532, Article 532

2019

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Algorithms in Bioinformatics: 15th International Workshop, WABI 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings

1st ed. 2015, 2015

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Genetic basis for virulence differences of various Cryptosporidium parvum carcinogenic isolates

Scientific Reports, 2020-04, Vol.10 (1), p.7316, Article 7316

2020

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Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data

Briefings in bioinformatics, 2020-07, Vol.21 (4), p.1164-1181

2020

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A complete protocol for whole-genome sequencing of virus from clinical samples: Application to coronavirus OC43

Virology (New York, N.Y.), 2019-05, Vol.531, p.141-148

2019

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DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data

BMC bioinformatics, 2018-06, Vol.19 (1), p.223-223, Article 223

2018

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Predicting transcription factor binding sites using local over-representation and comparative genomics

BMC bioinformatics, 2006-08, Vol.7 (1), p.396-396, Article 396

2006

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Fascin-1 expression is associated with neuroendocrine prostate cancer and directly suppressed by androgen receptor

British journal of cancer, 2023-12, Vol.129 (12), p.1903-1914

2023

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On the Levenshtein Automaton and the Size of the Neighbourhood of a Word

Language and Automata Theory and Applications, p.207-218

Touzet, Hélène

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Conservation of the glycogen metabolism pathway underlines a pivotal function of storage polysaccharides in Chlamydiae

Communications biology, 2021-03, Vol.4 (1), p.296-296, Article 296

2021

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Modeling alternate RNA structures in genomic sequences

Journal of computational biology, 2015-03, Vol.22 (3), p.190-204

2015

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Use of whole-genome sequencing in the molecular investigation of care-associated HCoV-OC43 infections in a hematopoietic stem cell transplant unit

Journal of clinical virology, 2020-01, Vol.122, p.104206-104206, Article 104206

2020

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Efficient and accurate P-value computation for Position Weight Matrices

Algorithms for molecular biology, 2007-12, Vol.2 (1), p.15-15, Article 15

2007

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Modeling Dynamic Programming Problems over Sequences and Trees with Inverse Coupled Rewrite Systems

Algorithms, 2014, Vol.7 (1), p.62-144

2014

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TgAP2IX-5 is a key transcriptional regulator of the asexual cell cycle division in Toxoplasma gondii

Nature communications, 2021-01, Vol.12 (1), p.116-116, Article 116

2021

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CARNAC: folding families of related RNAs

Nucleic acids research, 2004-07, Vol.32 (Web Server issue), p.W142

2004

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Alignments of RNA Structures

IEEE/ACM transactions on computational biology and bioinformatics, 2010-04, Vol.7 (2), p.309-322

2010

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RNAspace.org: An integrated environment for the prediction, annotation, and analysis of ncRNA

RNA (Cambridge), 2011-11, Vol.17 (11), p.1947-1956

2011

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String Processing and Information Retrieval: 28th International Symposium, SPIRE 2021, Lille, France, October 4-6, 2021, Proceedings

Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

Efficient approximations of RNA kinetics landscape using non-redundant sampling

Algorithms in Bioinformatics: 15th International Workshop, WABI 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings

MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes

Porechop_ABI: discovering unknown adapters in Oxford Nanopore Technology sequencing reads for downstream trimming

miRkwood: a tool for the reliable identification of microRNAs in plant genomes

Algorithms in Bioinformatics: 15th International Workshop, WABI 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings

Genetic basis for virulence differences of various Cryptosporidium parvum carcinogenic isolates

Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data

A complete protocol for whole-genome sequencing of virus from clinical samples: Application to coronavirus OC43

DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data

Predicting transcription factor binding sites using local over-representation and comparative genomics

Fascin-1 expression is associated with neuroendocrine prostate cancer and directly suppressed by androgen receptor

On the Levenshtein Automaton and the Size of the Neighbourhood of a Word

Conservation of the glycogen metabolism pathway underlines a pivotal function of storage polysaccharides in Chlamydiae

Modeling alternate RNA structures in genomic sequences

Use of whole-genome sequencing in the molecular investigation of care-associated HCoV-OC43 infections in a hematopoietic stem cell transplant unit

Efficient and accurate P-value computation for Position Weight Matrices

Modeling Dynamic Programming Problems over Sequences and Trees with Inverse Coupled Rewrite Systems

TgAP2IX-5 is a key transcriptional regulator of the asexual cell cycle division in Toxoplasma gondii

CARNAC: folding families of related RNAs

Alignments of RNA Structures

RNAspace.org: An integrated environment for the prediction, annotation, and analysis of ncRNA

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