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Bashing irreproducibility with shournal

Scientific reports, 2024-02, Vol.14 (1), p.4872-4872, Article 4872

2024

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metilene: fast and sensitive calling of differentially methylated regions from bisulfite sequencing data

Genome research, 2016-02, Vol.26 (2), p.256-262

2016

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The landscape of human p53‐regulated long non‐coding RNAs reveals critical host gene co‐regulation

Molecular oncology, 2023-07, Vol.17 (7), p.1263-1279

2023

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multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection

Genome biology, 2014-01, Vol.15 (2), p.R34-R34

2014

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The primary transcriptome of the major human pathogen Helicobacter pylori

Nature (London), 2010-03, Vol.464 (7286), p.250-255

2010

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Alu elements in ANRIL non-coding RNA at chromosome 9p21 modulate atherogenic cell functions through trans-regulation of gene networks

PLoS genetics, 2013-07, Vol.9 (7), p.e1003588

2013

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Fast mapping of short sequences with mismatches, insertions and deletions using index structures

PLoS computational biology, 2009-09, Vol.5 (9), p.e1000502-e1000502

2009

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Transcription factor RFX7 governs a tumor suppressor network in response to p53 and stress

Nucleic acids research, 2021-07, Vol.49 (13), p.7437-7456

2021

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Dissecting the DNA binding landscape and gene regulatory network of p63 and p53

eLife, 2020-12, Vol.9

2020

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Multivariable Modeling of Biomarker Data From the Phase I Foundation for the National Institutes of Health Osteoarthritis Biomarkers Consortium

Arthritis care & research (2010), 2022-07, Vol.74 (7), p.1142-1153

2022

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Evidence-Based Study Design for Hospital-Acquired Bacterial Pneumonia and Ventilator-Associated Bacterial Pneumonia

The Journal of infectious diseases, 2019-05, Vol.219 (10), p.1536-1544

2019

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Nonlinear DNA methylation trajectories in aging male mice

Nature communications, 2024-04, Vol.15 (1), p.3074-3074, Article 3074

2024

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Taz protects hematopoietic stem cells from an aging-dependent decrease in PU.1 activity

Nature communications, 2022-09, Vol.13 (1), p.5187-5187, Article 5187

2022

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Tickt’s noch? 5-Methylcytosine und die Altersbestimmung

Biospektrum, 2020-03, Vol.26 (2), p.148-152

Hoffmann, Steve

2020

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Alternative Animal Models of Aging Research

Frontiers in molecular biosciences, 2021-05, Vol.8, p.660959-660959

2021

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Reply to Hart et al.: MINCR and MYC: More than expression correlation

Proceedings of the National Academy of Sciences - PNAS, 2016-02, Vol.113 (5), p.E498-E498

2016

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Evidence for human microRNA-offset RNAs in small RNA sequencing data

Bioinformatics, 2009-09, Vol.25 (18), p.2298-2301

2009

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Synthesizing genome regulation data with vote-counting

Trends in genetics, 2022-12, Vol.38 (12), p.1208-1216

2022

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Increased longevity due to sexual activity in mole-rats is associated with transcriptional changes in the HPA stress axis

eLife, 2021-03, Vol.10

2021

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Age‐Associated Changes in Endothelial Transcriptome and Epigenetic Landscapes Correlate With Elevated Risk of Cerebral Microbleeds

Journal of the American Heart Association, 2023-09, Vol.12 (17), p.e031044-e031044

2023

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Higher gene expression stability during aging in long-lived giant mole-rats than in short-lived rats

Aging (Albany, NY.), 2018-12, Vol.10 (12), p.3938-3956

2018

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Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

BMC genomics, 2019-09, Vol.20 (1), p.712-14, Article 712

2019

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Gene expression profile of human T cells following a single stimulation of peripheral blood mononuclear cells with anti-CD3 antibodies

BMC genomics, 2019-07, Vol.20 (1), p.593-593, Article 593

2019

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Increased prostaglandin-D2 in male STAT3-deficient hearts shifts cardiac progenitor cells from endothelial to white adipocyte differentiation

PLoS biology, 2020-12, Vol.18 (12), p.e3000739-e3000739

2020

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Bashing irreproducibility with shournal

metilene: fast and sensitive calling of differentially methylated regions from bisulfite sequencing data

The landscape of human p53‐regulated long non‐coding RNAs reveals critical host gene co‐regulation

multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection

The primary transcriptome of the major human pathogen Helicobacter pylori

Alu elements in ANRIL non-coding RNA at chromosome 9p21 modulate atherogenic cell functions through trans-regulation of gene networks

Fast mapping of short sequences with mismatches, insertions and deletions using index structures

Transcription factor RFX7 governs a tumor suppressor network in response to p53 and stress

Dissecting the DNA binding landscape and gene regulatory network of p63 and p53

Multivariable Modeling of Biomarker Data From the Phase I Foundation for the National Institutes of Health Osteoarthritis Biomarkers Consortium

Evidence-Based Study Design for Hospital-Acquired Bacterial Pneumonia and Ventilator-Associated Bacterial Pneumonia

Nonlinear DNA methylation trajectories in aging male mice

Taz protects hematopoietic stem cells from an aging-dependent decrease in PU.1 activity

Tickt’s noch? 5-Methylcytosine und die Altersbestimmung

Alternative Animal Models of Aging Research

Reply to Hart et al.: MINCR and MYC: More than expression correlation

Evidence for human microRNA-offset RNAs in small RNA sequencing data

Synthesizing genome regulation data with vote-counting

Increased longevity due to sexual activity in mole-rats is associated with transcriptional changes in the HPA stress axis

Age‐Associated Changes in Endothelial Transcriptome and Epigenetic Landscapes Correlate With Elevated Risk of Cerebral Microbleeds

Higher gene expression stability during aging in long-lived giant mole-rats than in short-lived rats

Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

Gene expression profile of human T cells following a single stimulation of peripheral blood mononuclear cells with anti-CD3 antibodies

Focal structural variants revealed by whole genome sequencing disrupt the histone demethylase KDM4C in B-cell lymphomas

Increased prostaglandin-D2 in male STAT3-deficient hearts shifts cardiac progenitor cells from endothelial to white adipocyte differentiation

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