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kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome

Bioinformatics, 2015-09, Vol.31 (17), p.2877-2878

2015

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A microbial detection array (MDA) for viral and bacterial detection

BMC genomics, 2010-11, Vol.11 (1), p.668-668, Article 668

2010

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FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science

Nature communications, 2019-07, Vol.10 (1), p.3313-13, Article 3313

2019

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Detection of ESKAPE Bacterial Pathogens at the Point of Care Using Isothermal DNA-Based Assays in a Portable Degas-Actuated Microfluidic Diagnostic Assay Platform

Applied and environmental microbiology, 2017-02, Vol.83 (4), p.E02449

2017

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Ultra-deep mutant spectrum profiling: improving sequencing accuracy using overlapping read pairs

BMC genomics, 2013-02, Vol.14 (1), p.96-96

2013

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Simulate_PCR for amplicon prediction and annotation from multiplex, degenerate primers and probes

BMC bioinformatics, 2014-07, Vol.15 (1), p.237-237, Article 237

2014

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Using populations of human and microbial genomes for organism detection in metagenomes

Genome research, 2015-07, Vol.25 (7), p.1056-1067

2015

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Axiom Microbiome Array, the next generation microarray for high-throughput pathogen and microbiome analysis

PloS one, 2019-02, Vol.14 (2), p.e0212045-e0212045

2019

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Cynomolgus macaque as an animal model for severe acute respiratory syndrome

PLoS medicine, 2006-05, Vol.3 (5), p.e149-e149

2006

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Conserved amino acid markers from past influenza pandemic strains

BMC microbiology, 2009-04, Vol.9 (1), p.77-77

2009

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The role of viral population diversity in adaptation of bovine coronavirus to new host environments

PloS one, 2013-01, Vol.8 (1), p.e52752-e52752

2013

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Culture-Independent Diagnostics for Health Security

Health security, 2016-05, Vol.14 (3), p.122-142

2016

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Limitations of TaqMan PCR for Detecting Divergent Viral Pathogens Illustrated by Hepatitis A, B, C, and E Viruses and Human Immunodeficiency Virus

Journal of Clinical Microbiology, 2003-06, Vol.41 (6), p.2417-2427

2003

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Targeted amplification for enhanced detection of biothreat agents by next-generation sequencing

BMC research notes, 2015-11, Vol.8 (680), p.682-682, Article 682

2015

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A functional gene array for detection of bacterial virulence elements

PloS one, 2008-05, Vol.3 (5), p.e2163

2008

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DNA signatures for detecting genetic engineering in bacteria

Genome biology, 2008-03, Vol.9 (3), p.R56-R56

2008

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Sequencing Needs for Viral Diagnostics

Journal of Clinical Microbiology, 2004-12, Vol.42 (12), p.5472-5476

2004

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Bacterial genome reference databases: progress and challenges

PDA journal of pharmaceutical science and technology, 2014-11, Vol.68 (6), p.619-625

Slezak, Tom

2014

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System To Assess Genome Sequencing Needs for Viral Protein Diagnostics and Therapeutics

Journal of Clinical Microbiology, 2005-04, Vol.43 (4), p.1807-1817

2005

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Draft versus finished sequence data for DNA and protein diagnostic signature development

Nucleic acids research, 2005-01, Vol.33 (18), p.5838-5850

2005

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Analysis of sensitivity and rapid hybridization of a multiplexed Microbial Detection Microarray

Journal of virological methods, 2014-06, Vol.201 (C), p.73-78

2014

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Increased Discrimination of Treponema pallidum Strains by Subtyping With a 4-Component System Incorporating a Mononucleotide Tandem Repeat in rpsA

Sexually transmitted diseases, 2019-04, Vol.46 (4), p.e42-e45

2019

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Pathogen surveillance in wild bottlenose dolphins Tursiops truncatus

Diseases of aquatic organisms, 2015-10, Vol.116 (2), p.83-91

2015

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Detection of ESKAPE Bacterial Pathogens at the Point of Care Using Isothermal DNA-Based Assays in a Portable Degas-Actuated Microfluidic Diagnostic Assay Platform

Applied and environmental microbiology, 2016-12, Vol.83 (4)

2016

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Optimizing SNP microarray probe design for high accuracy microbial genotyping

Journal of microbiological methods, 2013-09, Vol.94 (3), p.303-310

2013

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kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome

A microbial detection array (MDA) for viral and bacterial detection

FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science

Detection of ESKAPE Bacterial Pathogens at the Point of Care Using Isothermal DNA-Based Assays in a Portable Degas-Actuated Microfluidic Diagnostic Assay Platform

Ultra-deep mutant spectrum profiling: improving sequencing accuracy using overlapping read pairs

Simulate_PCR for amplicon prediction and annotation from multiplex, degenerate primers and probes

Using populations of human and microbial genomes for organism detection in metagenomes

Axiom Microbiome Array, the next generation microarray for high-throughput pathogen and microbiome analysis

Cynomolgus macaque as an animal model for severe acute respiratory syndrome

Conserved amino acid markers from past influenza pandemic strains

The role of viral population diversity in adaptation of bovine coronavirus to new host environments

Culture-Independent Diagnostics for Health Security

Limitations of TaqMan PCR for Detecting Divergent Viral Pathogens Illustrated by Hepatitis A, B, C, and E Viruses and Human Immunodeficiency Virus

Targeted amplification for enhanced detection of biothreat agents by next-generation sequencing

A functional gene array for detection of bacterial virulence elements

DNA signatures for detecting genetic engineering in bacteria

Sequencing Needs for Viral Diagnostics

Bacterial genome reference databases: progress and challenges

System To Assess Genome Sequencing Needs for Viral Protein Diagnostics and Therapeutics

Draft versus finished sequence data for DNA and protein diagnostic signature development

Analysis of sensitivity and rapid hybridization of a multiplexed Microbial Detection Microarray

Increased Discrimination of Treponema pallidum Strains by Subtyping With a 4-Component System Incorporating a Mononucleotide Tandem Repeat in rpsA

Pathogen surveillance in wild bottlenose dolphins Tursiops truncatus

Detection of ESKAPE Bacterial Pathogens at the Point of Care Using Isothermal DNA-Based Assays in a Portable Degas-Actuated Microfluidic Diagnostic Assay Platform

Optimizing SNP microarray probe design for high accuracy microbial genotyping

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