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Breeding New Premium Quality Cultivars by Citrus Breeding 2.0 in Japan: An Integrative Approach Suggested by Genealogy

Horticulturae, 2022-06, Vol.8 (6), p.559

Shimizu, Tokurou

2022

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General Utilities for Genotyping Study (GUGS): A Comprehensive Application in Genotype and Sequence Data Manipulation

Japan Agricultural Research Quarterly: JARQ, 2021/10/01, Vol.55(4), pp.333-339

SHIMIZU, Tokurou

2021

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Citrus Breeding 2.0: A Novel Approach Integrating Deciphered Parentage and Genomics-assisted Selection

Japan Agricultural Research Quarterly: JARQ, 2019/04/01, Vol.53(2), pp.81-85

SHIMIZU, Tokurou

2019

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Hybrid Origins of Citrus Varieties Inferred from DNA Marker Analysis of Nuclear and Organelle Genomes

PloS one, 2016-11, Vol.11 (11), p.e0166969-e0166969

2016

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Genome-wide association study and genomic prediction in citrus: Potential of genomics-assisted breeding for fruit quality traits

Scientific reports, 2017-07, Vol.7 (1), p.4721-13, Article 4721

2017

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Dissecting Breeders' Sense via Explainable Machine Learning Approach: Application to Fruit Peelability and Hardness in Citrus

Frontiers in plant science, 2022-02, Vol.13, p.832749-832749

2022

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Allelic haplotype combinations at the MS-P1 region, including P-class pentatricopeptide repeat family genes, influence wide phenotypic variation in pollen grain number through a cytoplasmic male sterility model in citrus

Frontiers in plant science, 2023-06, Vol.14, p.1163358-1163358

2023

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QTL mapping of male sterility and transmission pattern in progeny of Satsuma mandarin

PloS one, 2018-07, Vol.13 (7), p.e0200844-e0200844

2018

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Draft Sequencing of the Heterozygous Diploid Genome of Satsuma ( Citrus unshiu Marc.) Using a Hybrid Assembly Approach

Frontiers in genetics, 2017-12, Vol.8, p.180-180

2017

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Segregation and Heritability of Male Sterility in Populations Derived from Progeny of Satsuma Mandarin

PloS one, 2016-09, Vol.11 (9), p.e0162408-e0162408

2016

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A post-labeling method for multiplexed and multicolored genotyping analysis of SSR, indel and SNP markers in single tube with bar-coded split tag (BStag)

BMC research notes, 2011-05, Vol.4 (1), p.161-161, Article 161

2011

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Gibberellin 2-Oxidase Genes from Satsuma Mandarin (Citrus unshiu Marc.) Caused Late Flowering and Dwarfism in Transgenic Arabidopsis

The Horticulture Journal, 2017, Vol.86(2), pp.183-193

2017

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DNApod: DNA polymorphism annotation database from next-generation sequence read archives

PloS one, 2017-02, Vol.12 (2), p.e0172269-e0172269

2017

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Efficient and accurate crop development by data-driven breeding—Efforts toward practical implementation of research achievements of a part of the 2nd Phase of Cross-ministerial Strategic Innovation Promotion Program

Breeding Research, 2022/06/01, Vol.24(1), pp.70-74

2022

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Transcriptome analysis of Pyrus pyrifolia leaf buds during transition from endodormancy to ecodormancy

Scientia horticulturae, 2012-11, Vol.147, p.49-55

2012

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Microarray analysis of gene expression patterns during fruit development in European pear (Pyrus communis)

Scientia horticulturae, 2013-12, Vol.164, p.466-473

2013

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H2DB: a heritability database across multiple species by annotating trait-associated genomic loci

Nucleic acids research, 2013-01, Vol.41 (Database issue), p.D880

2013

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Minimal marker: an algorithm and computer program for the identification of minimal sets of discriminating DNA markers for efficient variety identification

Journal of bioinformatics and computational biology, 2013-04, Vol.11 (2), p.1250022

2013

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Parthenocarpic genetic resources and gene expression related to parthenocarpy among four species in pear (Pyrus spp.)

Scientia horticulturae, 2012-03, Vol.136, p.101-109

2012

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Production of doubled-haploid(DH) selfed-progenies in ‘Banpeiyu’ pummelo [Citrus maxima (Burm.) Merr.] and its genetic analysis with simple sequence repeat markers

Scientia horticulturae, 2021-02, Vol.277, p.109782, Article 109782

2021

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Corrigendum: Allelic haplotype combinations at the MS-P1 region, including P-class pentatricopeptide repeat family genes, influence wide phenotypic variation in pollen grain number through a cytoplasmic male sterility model in citrus

Frontiers in plant science, 2024-04, Vol.15

2024

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Tolerance to Citrus mosaic virus in transgenic trifoliate orange lines harboring capsid polyprotein gene

Plant disease, 2004-08, Vol.88 (8), p.865-868

2004

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Molecular characterization of FLOWERING LOCUS T-like genes of apple (Malus x domestica Borkh.)

Plant and cell physiology, 2010-04, Vol.51 (4), p.561-575

2010

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Increased CiFT abundance in the stem correlates with floral induction by low temperature in Satsuma mandarin (Citrus unshiu Marc.)

Journal of experimental botany, 2007-11, Vol.58 (14), p.3915-3927

2007

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Efficient and accurate crop development by data-driven breeding—Efforts toward practical implementation of research achievements of a part of the 2nd Phase of Cross-ministerial Strategic Innovation Promotion Program

Ikushugaku kenkyu, 2022-06, Vol.24 (1), p.70-74, Article 24.W02

2022

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Breeding New Premium Quality Cultivars by Citrus Breeding 2.0 in Japan: An Integrative Approach Suggested by Genealogy

General Utilities for Genotyping Study (GUGS): A Comprehensive Application in Genotype and Sequence Data Manipulation

Citrus Breeding 2.0: A Novel Approach Integrating Deciphered Parentage and Genomics-assisted Selection

Hybrid Origins of Citrus Varieties Inferred from DNA Marker Analysis of Nuclear and Organelle Genomes

Genome-wide association study and genomic prediction in citrus: Potential of genomics-assisted breeding for fruit quality traits

Dissecting Breeders' Sense via Explainable Machine Learning Approach: Application to Fruit Peelability and Hardness in Citrus

Allelic haplotype combinations at the MS-P1 region, including P-class pentatricopeptide repeat family genes, influence wide phenotypic variation in pollen grain number through a cytoplasmic male sterility model in citrus

QTL mapping of male sterility and transmission pattern in progeny of Satsuma mandarin

Draft Sequencing of the Heterozygous Diploid Genome of Satsuma ( Citrus unshiu Marc.) Using a Hybrid Assembly Approach

Segregation and Heritability of Male Sterility in Populations Derived from Progeny of Satsuma Mandarin

A post-labeling method for multiplexed and multicolored genotyping analysis of SSR, indel and SNP markers in single tube with bar-coded split tag (BStag)

Gibberellin 2-Oxidase Genes from Satsuma Mandarin (Citrus unshiu Marc.) Caused Late Flowering and Dwarfism in Transgenic Arabidopsis

DNApod: DNA polymorphism annotation database from next-generation sequence read archives

Efficient and accurate crop development by data-driven breeding—Efforts toward practical implementation of research achievements of a part of the 2nd Phase of Cross-ministerial Strategic Innovation Promotion Program

Transcriptome analysis of Pyrus pyrifolia leaf buds during transition from endodormancy to ecodormancy

Microarray analysis of gene expression patterns during fruit development in European pear (Pyrus communis)

H2DB: a heritability database across multiple species by annotating trait-associated genomic loci

Minimal marker: an algorithm and computer program for the identification of minimal sets of discriminating DNA markers for efficient variety identification

Parthenocarpic genetic resources and gene expression related to parthenocarpy among four species in pear (Pyrus spp.)

Production of doubled-haploid(DH) selfed-progenies in ‘Banpeiyu’ pummelo [Citrus maxima (Burm.) Merr.] and its genetic analysis with simple sequence repeat markers

Corrigendum: Allelic haplotype combinations at the MS-P1 region, including P-class pentatricopeptide repeat family genes, influence wide phenotypic variation in pollen grain number through a cytoplasmic male sterility model in citrus

Tolerance to Citrus mosaic virus in transgenic trifoliate orange lines harboring capsid polyprotein gene

Molecular characterization of FLOWERING LOCUS T-like genes of apple (Malus x domestica Borkh.)

Increased CiFT abundance in the stem correlates with floral induction by low temperature in Satsuma mandarin (Citrus unshiu Marc.)

Efficient and accurate crop development by data-driven breeding—Efforts toward practical implementation of research achievements of a part of the 2nd Phase of Cross-ministerial Strategic Innovation Promotion Program

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