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Light contamination in stable isotope-labelled internal peptide standards is frequent and a potential source of false discovery and quantitation error in proteomics

Analytical and bioanalytical chemistry, 2022-03, Vol.414 (8), p.2545-2552

2022

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Proteomic Analysis of Human Blood Serum Using Peptide Library Beads

Journal of proteome research, 2007-10, Vol.6 (10), p.4055-4062

2007

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Implications for Kinetochore-Microtubule Attachment from the Structure of an Engineered Ndc80 Complex

Cell, 2008-05, Vol.133 (3), p.427-439

2008

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CPFP: a central proteomics facilities pipeline

Bioinformatics, 2010-04, Vol.26 (8), p.1131-1132

2010

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Quantitative phosphoproteome analysis unveils LAT as a modulator of CD3ζ and ZAP-70 tyrosine phosphorylation

PloS one, 2013, Vol.8 (10), p.e77423-e77423

2013

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Autoimmune-associated PTPN22 R620W Variation Reduces Phosphorylation of Lymphoid Phosphatase on an Inhibitory Tyrosine Residue

The Journal of biological chemistry, 2010-08, Vol.285 (34), p.26506-26518

2010

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Phosphorylation of Hdmx Mediates Its Hdm2- and ATM-Dependent Degradation in Response to DNA Damage

Proceedings of the National Academy of Sciences - PNAS, 2005-04, Vol.102 (14), p.5056-5061

2005

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Quantitative Dynamics of Phosphoproteome: The Devil Is in the Details

Analytical chemistry (Washington), 2012-10, Vol.84 (20), p.8431-8436

2012

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Constitutively Active Lck Kinase in T Cells Drives Antigen Receptor Signal Transduction

Immunity (Cambridge, Mass.), 2010-06, Vol.32 (6), p.766-777

2010

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Abstract 578: Investigation of the effect of hypoxia on presentation of HPV16-derived antigens - implications for therapeutic vaccine design

Cancer research (Chicago, Ill.), 2019-07, Vol.79 (13_Supplement), p.578-578

2019

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Transcriptome-based identification of tumor-reactive and bystander CD8 + T cell receptor clonotypes in human pancreatic cancer

Science translational medicine, 2023-11, Vol.15 (722), p.eadh9562

2023

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A Targeted LC‐MS Strategy for Low‐Abundant HLA Class‐I‐Presented Peptide Detection Identifies Novel Human Papillomavirus T‐Cell Epitopes

Proteomics (Weinheim), 2018-06, Vol.18 (11), p.e1700390-n/a

2018

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Themis controls thymocyte selection through regulation of T cell antigen receptor-mediated signaling

Nature immunology, 2009-08, Vol.10 (8), p.848-856

2009

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Proteomic Characterization of Plasma Membrane-proximal T Cell Activation Responses

The Journal of biological chemistry, 2011-02, Vol.286 (6), p.4072-4080

2011

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T Cell Receptor (TCR)-induced Tyrosine Phosphorylation Dynamics Identifies THEMIS as a New TCR Signalosome Component

The Journal of biological chemistry, 2011-03, Vol.286 (9), p.7535-7547

2011

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Quantitative Phosphoproteome Analysis Unveils LAT as a Modulator of CD3[zeta] and ZAP-70 Tyrosine Phosphorylation.(Research Article)

PloS one, 2013-10, Vol.8 (10), p.e77423

2013

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Kidins220/ARMS associates with B-Raf and the TCR, promoting sustained Erk signaling in T cells

The Journal of immunology (1950), 2013-03, Vol.190 (5), p.1927-1935

2013

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A novel pathway down-modulating T cell activation involves HPK-1-dependent recruitment of 14-3-3 proteins on SLP-76

The Journal of experimental medicine, 2007-03, Vol.204 (3), p.681-691

2007

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phosphoproteome of Arabidopsis plants lacking the oxidative signal-inducible1 (OXI1) protein kinase

The New phytologist, 2011-04, Vol.190 (1), p.49-56

2011

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Neutral Loss-Based Phosphopeptide Recognition: A Collection of Caveats

Journal of proteome research, 2007-07, Vol.6 (7), p.2866-2873

2007

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Protein Tyrosine-O-Sulfation Analysis by Exhaustive Product Ion Scanning with Minimum Collision Offset in a NanoESI Q-TOF Tandem Mass Spectrometer

Analytical chemistry (Washington), 2004-09, Vol.76 (17), p.5136-5142

2004

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Neutral loss of amino acid residues from protonated peptides in collision-induced dissociation generates N- or C-terminal sequence ladders

Journal of mass spectrometry., 2003-11, Vol.38 (11), p.1143-1149

2003

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Analysis of Protein Tyrosine Phosphorylation by Nanoelectrospray Ionization High-Resolution Tandem Mass Spectrometry and Tyrosine-Targeted Product Ion Scanning

Analytical chemistry (Washington), 2003-06, Vol.75 (11), p.2724-2729

2003

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Themis controls thymocyte selection through regulation of T cell receptor-mediated signaling

Nature immunology, 2009-07, Vol.10 (8), p.848-856

2009

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Analysis of thyroglobulin iodination by tandem mass spectrometry using immonium ions of monoiodo- and diiodo-tyrosine

Proteomics (Weinheim), 2005-02, Vol.5 (2), p.351-353

2005

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Light contamination in stable isotope-labelled internal peptide standards is frequent and a potential source of false discovery and quantitation error in proteomics

Proteomic Analysis of Human Blood Serum Using Peptide Library Beads

Implications for Kinetochore-Microtubule Attachment from the Structure of an Engineered Ndc80 Complex

CPFP: a central proteomics facilities pipeline

Quantitative phosphoproteome analysis unveils LAT as a modulator of CD3ζ and ZAP-70 tyrosine phosphorylation

Autoimmune-associated PTPN22 R620W Variation Reduces Phosphorylation of Lymphoid Phosphatase on an Inhibitory Tyrosine Residue

Phosphorylation of Hdmx Mediates Its Hdm2- and ATM-Dependent Degradation in Response to DNA Damage

Quantitative Dynamics of Phosphoproteome: The Devil Is in the Details

Constitutively Active Lck Kinase in T Cells Drives Antigen Receptor Signal Transduction

Abstract 578: Investigation of the effect of hypoxia on presentation of HPV16-derived antigens - implications for therapeutic vaccine design

Transcriptome-based identification of tumor-reactive and bystander CD8 + T cell receptor clonotypes in human pancreatic cancer

A Targeted LC‐MS Strategy for Low‐Abundant HLA Class‐I‐Presented Peptide Detection Identifies Novel Human Papillomavirus T‐Cell Epitopes

Themis controls thymocyte selection through regulation of T cell antigen receptor-mediated signaling

Proteomic Characterization of Plasma Membrane-proximal T Cell Activation Responses

T Cell Receptor (TCR)-induced Tyrosine Phosphorylation Dynamics Identifies THEMIS as a New TCR Signalosome Component

Quantitative Phosphoproteome Analysis Unveils LAT as a Modulator of CD3[zeta] and ZAP-70 Tyrosine Phosphorylation.(Research Article)

Kidins220/ARMS associates with B-Raf and the TCR, promoting sustained Erk signaling in T cells

A novel pathway down-modulating T cell activation involves HPK-1-dependent recruitment of 14-3-3 proteins on SLP-76

phosphoproteome of Arabidopsis plants lacking the oxidative signal-inducible1 (OXI1) protein kinase

Neutral Loss-Based Phosphopeptide Recognition: A Collection of Caveats

Protein Tyrosine-O-Sulfation Analysis by Exhaustive Product Ion Scanning with Minimum Collision Offset in a NanoESI Q-TOF Tandem Mass Spectrometer

Neutral loss of amino acid residues from protonated peptides in collision-induced dissociation generates N- or C-terminal sequence ladders

Analysis of Protein Tyrosine Phosphorylation by Nanoelectrospray Ionization High-Resolution Tandem Mass Spectrometry and Tyrosine-Targeted Product Ion Scanning

Themis controls thymocyte selection through regulation of T cell receptor-mediated signaling

Analysis of thyroglobulin iodination by tandem mass spectrometry using immonium ions of monoiodo- and diiodo-tyrosine

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