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Nebulosa recovers single-cell gene expression signals by kernel density estimation

Bioinformatics (Oxford, England), 2021-08, Vol.37 (16), p.2485-2487

2021

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scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data

Genome Biology, 2019-12, Vol.20 (1), p.264-264, Article 264

2019

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Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets

Nature genetics, 2016-05, Vol.48 (5), p.481-487

2016

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DropletQC: improved identification of empty droplets and damaged cells in single-cell RNA-seq data

Genome Biology, 2021-12, Vol.22 (1), p.329-329, Article 329

2021

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Benchmarking of cell type deconvolution pipelines for transcriptomics data

Nature communications, 2020-11, Vol.11 (1), p.5650-5650, Article 5650

2020

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Reconciling the analysis of IBD and IBS in complex trait studies

Nature reviews. Genetics, 2010-11, Vol.11 (11), p.800

2010

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Single-cell eQTL mapping identifies cell type-specific genetic control of autoimmune disease

Science (American Association for the Advancement of Science), 2022-04, Vol.376 (6589), p.eabf3041-eabf3041

2022

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Signatures of negative selection in the genetic architecture of human complex traits

Nature genetics, 2018-05, Vol.50 (5), p.746-753

2018

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The Genetic Architecture of Gene Expression in Peripheral Blood

American journal of human genetics, 2017-02, Vol.100 (2), p.228-237

2017

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Pitfalls and opportunities for applying latent variables in single-cell eQTL analyses

Genome Biology, 2023-02, Vol.24 (1), p.33-33, Article 33

2023

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Identification of 55,000 Replicated DNA Methylation QTL

Scientific reports, 2018-12, Vol.8 (1), p.17605-9, Article 17605

2018

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Deciphering cancer cell state plasticity with single-cell genomics and artificial intelligence

Genome medicine, 2024-02, Vol.16 (1), p.36-36

2024

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Single-Cell Transcriptional Profiling of Aortic Endothelium Identifies a Hierarchy from Endovascular Progenitors to Differentiated Cells

Cell reports (Cambridge), 2019-05, Vol.27 (9), p.2748-2758.e3

2019

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Single-cell RNA-seq of human induced pluripotent stem cells reveals cellular heterogeneity and cell state transitions between subpopulations

Genome research, 2018-07, Vol.28 (7), p.1053

2018

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Neonatal DNA methylation profile in human twins is specified by a complex interplay between intrauterine environmental and genetic factors, subject to tissue-specific influence

Genome research, 2012-08, Vol.22 (8), p.1395

2012

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Single cell eQTL analysis identifies cell type-specific genetic control of gene expression in fibroblasts and reprogrammed induced pluripotent stem cells

Genome Biology, 2021-03, Vol.22 (1), p.76-76, Article 76

2021

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Human population dispersal "Out of Africa" estimated from linkage disequilibrium and allele frequencies of SNPs

Genome research, 2011-06, Vol.21 (6), p.821

2011

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AAV-Mediated CRISPR/Cas Gene Editing of Retinal Cells In Vivo

Investigative ophthalmology & visual science, 2016-06, Vol.57 (7), p.3470-3476

2016

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Demuxafy: improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods

Genome Biology, 2024-04, Vol.25 (1), p.94-94

2024

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Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank

Science advances, 2019-08, Vol.5 (8), p.eaaw3538

2019

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Genotype-free demultiplexing of pooled single-cell RNA-seq

Genome Biology, 2019-12, Vol.20 (1), p.290-290, Article 290

2019

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DevKidCC allows for robust classification and direct comparisons of kidney organoid datasets

Genome medicine, 2022-02, Vol.14 (1), p.19-19, Article 19

2022

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Transcriptomic and proteomic retinal pigment epithelium signatures of age-related macular degeneration

Nature communications, 2022-07, Vol.13 (1), p.4233-4233, Article 4233

2022

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Nebulosa recovers single-cell gene expression signals by kernel density estimation

scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data

Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets

DropletQC: improved identification of empty droplets and damaged cells in single-cell RNA-seq data

Benchmarking of cell type deconvolution pipelines for transcriptomics data

Reconciling the analysis of IBD and IBS in complex trait studies

Single-cell eQTL mapping identifies cell type-specific genetic control of autoimmune disease

Signatures of negative selection in the genetic architecture of human complex traits

Single-Cell Transcriptomic Analysis of Cardiac Differentiation from Human PSCs Reveals HOPX-Dependent Cardiomyocyte Maturation

The Genetic Architecture of Gene Expression in Peripheral Blood

Pitfalls and opportunities for applying latent variables in single-cell eQTL analyses

Identification of 55,000 Replicated DNA Methylation QTL

Deciphering cancer cell state plasticity with single-cell genomics and artificial intelligence

Single-Cell Transcriptional Profiling of Aortic Endothelium Identifies a Hierarchy from Endovascular Progenitors to Differentiated Cells

Single-cell RNA-seq of human induced pluripotent stem cells reveals cellular heterogeneity and cell state transitions between subpopulations

Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma

Neonatal DNA methylation profile in human twins is specified by a complex interplay between intrauterine environmental and genetic factors, subject to tissue-specific influence

Single cell eQTL analysis identifies cell type-specific genetic control of gene expression in fibroblasts and reprogrammed induced pluripotent stem cells

Human population dispersal "Out of Africa" estimated from linkage disequilibrium and allele frequencies of SNPs

AAV-Mediated CRISPR/Cas Gene Editing of Retinal Cells In Vivo

Demuxafy: improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods

Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank

Genotype-free demultiplexing of pooled single-cell RNA-seq

DevKidCC allows for robust classification and direct comparisons of kidney organoid datasets

Transcriptomic and proteomic retinal pigment epithelium signatures of age-related macular degeneration

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