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Population genomics of rapid adaptation by soft selective sweeps

Trends in ecology & evolution (Amsterdam), 2013-11, Vol.28 (11), p.659-669

2013

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Evidence that mutation is universally biased towards AT in bacteria

PLoS genetics, 2010-09, Vol.6 (9), p.e1001115-e1001115

2010

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Recent selective sweeps in North American Drosophila melanogaster show signatures of soft sweeps

PLoS genetics, 2015-02, Vol.11 (2), p.e1005004-e1005004

2015

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Genomic evidence of rapid and stable adaptive oscillations over seasonal time scales in Drosophila

PLoS genetics, 2014-11, Vol.10 (11), p.e1004775

2014

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Selection on codon bias

Annual review of genetics, 2008-01, Vol.42 (1), p.287-299

2008

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Evidence of Selection against Complex Mitotic-Origin Aneuploidy during Preimplantation Development

PLoS genetics, 2015-10, Vol.11 (10), p.e1005601-e1005601

2015

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Frequent adaptation and the McDonald–Kreitman test

Proceedings of the National Academy of Sciences - PNAS, 2013-05, Vol.110 (21), p.8615-8620

2013

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Viruses are a dominant driver of protein adaptation in mammals

eLife, 2016-05, Vol.5

2016

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Precise estimates of mutation rate and spectrum in yeast

Proceedings of the National Academy of Sciences - PNAS, 2014-06, Vol.111 (22), p.E2310-E2318

2014

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Pervasive natural selection in the Drosophila genome?

PLoS genetics, 2009-06, Vol.5 (6), p.e1000495-e1000495

2009

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Strong purifying selection at synonymous sites in D. melanogaster

PLoS genetics, 2013-05, Vol.9 (5), p.e1003527

2013

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Quantitative evolutionary dynamics using high-resolution lineage tracking

Nature (London), 2015-03, Vol.519 (7542), p.181-186

2015

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Genome-wide signals of positive selection in human evolution

Genome research, 2014-06, Vol.24 (6), p.885

2014

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Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements

PloS one, 2014-09, Vol.9 (9), p.e106689-e106689

2014

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General rules for optimal codon choice

PLoS genetics, 2009-07, Vol.5 (7), p.e1000556-e1000556

2009

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Evidence that adaptation in Drosophila is not limited by mutation at single sites

PLoS genetics, 2010-06, Vol.6 (6), p.e1000924-e1000924

2010

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Detection of hard and soft selective sweeps from Drosophila melanogaster population genomic data

PLoS genetics, 2021-02, Vol.17 (2), p.e1009373-e1009373

2021

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The clarifying role of time series data in the population genetics of HIV

PLoS genetics, 2021-01, Vol.17 (1), p.e1009050

2021

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Effects of maternal age on euploidy rates in a large cohort of embryos analyzed with 24-chromosome single-nucleotide polymorphism–based preimplantation genetic screening

Fertility and sterility, 2016-05, Vol.105 (5), p.1307-1313

2016

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Host species and environmental effects on bacterial communities associated with Drosophila in the laboratory and in the natural environment

PloS one, 2013-08, Vol.8 (8), p.e70749-e70749

2013

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Genome patterns of selection and introgression of haplotypes in natural populations of the house mouse (Mus musculus)

PLoS genetics, 2012-08, Vol.8 (8), p.e1002891-e1002891

2012

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Whole Genome Analysis of 132 Clinical Saccharomyces cerevisiae Strains Reveals Extensive Ploidy Variation

G3 : genes - genomes - genetics, 2016-08, Vol.6 (8), p.2421-2434

2016

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Heterozygote advantage as a natural consequence of adaptation in diploids

Proceedings of the National Academy of Sciences - PNAS, 2011-12, Vol.108 (51), p.20666-20671

2011

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Imperfect drug penetration leads to spatial monotherapy and rapid evolution of multidrug resistance

Proceedings of the National Academy of Sciences - PNAS, 2015-06, Vol.112 (22), p.E2874-E2883

2015

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High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography

PLoS biology, 2008-12, Vol.6 (12), p.e311-e311

2008

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Population genomics of rapid adaptation by soft selective sweeps

Evidence that mutation is universally biased towards AT in bacteria

Recent selective sweeps in North American Drosophila melanogaster show signatures of soft sweeps

Genomic evidence of rapid and stable adaptive oscillations over seasonal time scales in Drosophila

Selection on codon bias

Evidence of Selection against Complex Mitotic-Origin Aneuploidy during Preimplantation Development

Frequent adaptation and the McDonald–Kreitman test

Viruses are a dominant driver of protein adaptation in mammals

Precise estimates of mutation rate and spectrum in yeast

Pervasive natural selection in the Drosophila genome?

Strong purifying selection at synonymous sites in D. melanogaster

Quantitative evolutionary dynamics using high-resolution lineage tracking

Genome-wide signals of positive selection in human evolution

Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements

General rules for optimal codon choice

Evidence that adaptation in Drosophila is not limited by mutation at single sites

Detection of hard and soft selective sweeps from Drosophila melanogaster population genomic data

The clarifying role of time series data in the population genetics of HIV

Effects of maternal age on euploidy rates in a large cohort of embryos analyzed with 24-chromosome single-nucleotide polymorphism–based preimplantation genetic screening

Host species and environmental effects on bacterial communities associated with Drosophila in the laboratory and in the natural environment

Genome patterns of selection and introgression of haplotypes in natural populations of the house mouse (Mus musculus)

Whole Genome Analysis of 132 Clinical Saccharomyces cerevisiae Strains Reveals Extensive Ploidy Variation

Heterozygote advantage as a natural consequence of adaptation in diploids

Imperfect drug penetration leads to spatial monotherapy and rapid evolution of multidrug resistance

High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography

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