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A Bioinformatics Approach to Investigate Structural and Non-Structural Proteins in Human Coronaviruses

Frontiers in genetics, 2022-06, Vol.13, p.891418-891418

2022

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A Computational Approach From Gene to Structure Analysis of the Human ABCA4 Transporter Involved in Genetic Retinal Diseases

Investigative ophthalmology & visual science, 2017-10, Vol.58 (12), p.5320-5328

2017

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Peptides and small molecules blocking the CXCR4/CXCL12 axis overcome bone marrow‑induced chemoresistance in acute leukemias

Oncology reports, 2019-01, Vol.41 (1), p.312-324

2019

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Toward a generalized computational workflow for exploiting transient pockets as new targets for small molecule stabilizers: Application to the homogentisate 1,2-dioxygenase mutants at the base of rare disease Alkaptonuria

Computational biology and chemistry, 2017-10, Vol.70, p.133-141

2017

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On Nature's Strategy for Assigning Genetic Code Multiplicity

PloS one, 2016-02, Vol.11 (2), p.e0148174-e0148174

2016

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Structural investigation of Rett-inducing MeCP2 mutations

Genes & diseases, 2019-03, Vol.6 (1), p.31-34

2019

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The role of oxidative stress in Friedreich's ataxia

FEBS letters, 2018-03, Vol.592 (5), p.718-727

2018

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Minimum-Energy Path for a U6 RNA Conformational Change Involving Protonation, Base-Pair Rearrangement and Base Flipping

Journal of molecular biology, 2009-09, Vol.391 (5), p.894-905

2009

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NMR studies on structure and dynamics of the monomeric derivative of BS-RNase: new insights for 3D domain swapping

PloS one, 2012-01, Vol.7 (1), p.e29076-e29076

2012

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A possible strategy to fight COVID-19: Interfering with spike glycoprotein trimerization

Biochemical and biophysical research communications, 2020-07, Vol.528 (1), p.35-38

2020

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Advanced Magnetic Resonance Techniques in Systems of High Molecular Complexity

1, 1986

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Exploring exchange processes in proteins by paramagnetic perturbation of NMR spectra

Physical chemistry chemical physics : PCCP, 2020-03, Vol.22 (11), p.6247-6259

2020

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Correction: Exploring exchange processes in proteins by paramagnetic perturbation of NMR spectra

Physical chemistry chemical physics : PCCP, 2020-07, Vol.22 (29), p.177-177

2020

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Structural bioinformatics survey on disease-inducing missense mutations

Journal of bioinformatics and computational biology, 2021-06, Vol.19 (3), p.2150008

2021

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Cold Denaturation Unveiled: Molecular Mechanism of the Asymmetric Unfolding of Yeast Frataxin

Chemphyschem, 2015-12, Vol.16 (17), p.3599-3602

2015

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Structural Bioinformatic Survey of Protein-Small Molecule Interfaces Delineates the Role of Glycine in Surface Pocket Formation

IEEE/ACM transactions on computational biology and bioinformatics, 2022-05, Vol.19 (3), p.1881-1886

2022

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SHELTERING FROM AVALANCHES OF BIOLOGICAL DATA: A NEW RESEARCH DIMENSION IN THE POST-GENOMICS ERA

Journal of the Siena Academy of Sciences, 2013-12, Vol.5 (1-IT), p.102

Niccolai, Neri

2013

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Homogentisic acid induces aggregation and fibrillation of amyloidogenic proteins

Biochimica et biophysica acta. General subjects, 2017-02, Vol.1861 (2), p.135-146

2017

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NMR Studies of Protein Surface Accessibility

The Journal of biological chemistry, 2001-11, Vol.276 (45), p.42455-42461

2001

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A structural bioinformatics investigation on protein-DNA complexes delineates their modes of interactionIn memory of Professor Anna Tramontano.Electronic supplementary information (ESI) available: Table S1: complete list of PDB ID codes of non-redundant 629 structures, which have been used for our studies on the amino acid composition of DNA-protein interfaces. See DOI: 10.1039/c7mb00071e

2017-05

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Probing protein surface accessibility with solvent and paramagnetic molecules

Progress in nuclear magnetic resonance spectroscopy, 2009-04, Vol.54 (3-4), p.278-289

2009

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Hot spot mapping of protein surfaces with TEMPOL: Bovine pancreatic RNase A as a model system

Biochimica et biophysica acta. Proteins and proteomics, 2017-02, Vol.1865 (2), p.201-207

2017

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Investigations into the killing activity of an antimicrobial peptide active against extensively antibiotic-resistant K. pneumon iae and P. aeruginosa

Biochimica et biophysica acta. Biomembranes, 2017-10, Vol.1859 (10), p.1796-1804

2017

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Mycobacterium tuberculosis Chaperonin 10 Is Secreted in the Macrophage Phagosome: Is Secretion Due to Dissociation and Adoption of a Partially Helical Structure at the Membrane?

Journal of Bacteriology, 2003-07, Vol.185 (14), p.4256-4267

2003

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Atom depth analysis delineates mechanisms of protein intermolecular interactions

Biochemical and biophysical research communications, 2013-07, Vol.436 (4), p.725-729

2013

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A Bioinformatics Approach to Investigate Structural and Non-Structural Proteins in Human Coronaviruses

A Computational Approach From Gene to Structure Analysis of the Human ABCA4 Transporter Involved in Genetic Retinal Diseases

Peptides and small molecules blocking the CXCR4/CXCL12 axis overcome bone marrow‑induced chemoresistance in acute leukemias

Toward a generalized computational workflow for exploiting transient pockets as new targets for small molecule stabilizers: Application to the homogentisate 1,2-dioxygenase mutants at the base of rare disease Alkaptonuria

On Nature's Strategy for Assigning Genetic Code Multiplicity

Structural investigation of Rett-inducing MeCP2 mutations

The role of oxidative stress in Friedreich's ataxia

Minimum-Energy Path for a U6 RNA Conformational Change Involving Protonation, Base-Pair Rearrangement and Base Flipping

NMR studies on structure and dynamics of the monomeric derivative of BS-RNase: new insights for 3D domain swapping

A possible strategy to fight COVID-19: Interfering with spike glycoprotein trimerization

Advanced Magnetic Resonance Techniques in Systems of High Molecular Complexity

Exploring exchange processes in proteins by paramagnetic perturbation of NMR spectra

Correction: Exploring exchange processes in proteins by paramagnetic perturbation of NMR spectra

Structural bioinformatics survey on disease-inducing missense mutations

Cold Denaturation Unveiled: Molecular Mechanism of the Asymmetric Unfolding of Yeast Frataxin

Structural Bioinformatic Survey of Protein-Small Molecule Interfaces Delineates the Role of Glycine in Surface Pocket Formation

SHELTERING FROM AVALANCHES OF BIOLOGICAL DATA: A NEW RESEARCH DIMENSION IN THE POST-GENOMICS ERA

Homogentisic acid induces aggregation and fibrillation of amyloidogenic proteins

NMR Studies of Protein Surface Accessibility

Probing protein surface accessibility with solvent and paramagnetic molecules

Hot spot mapping of protein surfaces with TEMPOL: Bovine pancreatic RNase A as a model system

Investigations into the killing activity of an antimicrobial peptide active against extensively antibiotic-resistant K. pneumon iae and P. aeruginosa

Mycobacterium tuberculosis Chaperonin 10 Is Secreted in the Macrophage Phagosome: Is Secretion Due to Dissociation and Adoption of a Partially Helical Structure at the Membrane?

Atom depth analysis delineates mechanisms of protein intermolecular interactions

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