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Data Processing of Product Ion Spectra: Redundancy of Product Ion Spectra of Small Molecules in Data-Dependent Acquisition Dataset

Mass Spectrometry, 2023/12/08, Vol.12(1), pp.A0138-A0138

Matsuda, Fumio

2023

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Current metabolomics: Practical applications

Journal of bioscience and bioengineering, 2013-06, Vol.115 (6), p.579-589

2013

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Regular expressions of MS/MS spectra for partial annotation of metabolite features

Metabolomics, 2016-07, Vol.12 (7), p.1, Article 113

Matsuda, Fumio

2016

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Enhancement of oxidative and drought tolerance in Arabidopsis by overaccumulation of antioxidant flavonoids

The Plant journal : for cell and molecular biology, 2014-02, Vol.77 (3), p.367-379

2014

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Computational data mining method for isotopomer analysis in the quantitative assessment of metabolic reprogramming

Scientific reports, 2020-01, Vol.10 (1), p.286-286, Article 286

2020

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Lipidome variation of industrial Saccharomyces cerevisiae strains analyzed by LC-QTOF/MS-based untargeted lipidomics

Journal of bioscience and bioengineering, 2023-02, Vol.135 (2), p.102-108

2023

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Rewiring of embryonic glucose metabolism via suppression of PFK-1 and aldolase during mouse chorioallantoic branching

Development (Cambridge), 2017-01, Vol.144 (1), p.63-73

2017

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Assessment of Protein Content and Phosphorylation Level in Synechocystis sp. PCC 6803 under Various Growth Conditions Using Quantitative Phosphoproteomic Analysis

Molecules (Basel, Switzerland), 2020-08, Vol.25 (16), p.3582

2020

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Metabolome‐genome‐wide association study dissects genetic architecture for generating natural variation in rice secondary metabolism

The Plant journal : for cell and molecular biology, 2015-01, Vol.81 (1), p.13-23

2015

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Learning from quantitative data to understand central carbon metabolism

Biotechnology advances, 2017-12, Vol.35 (8), p.971-980

2017

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Survival of membrane-damaged Escherichia coli in a cytosol-mimicking solution

Journal of bioscience and bioengineering, 2019-11, Vol.128 (5), p.558-563

2019

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Improvement of ethanol and 2,3-butanediol production in Saccharomyces cerevisiae by ATP wasting

Microbial cell factories, 2023-10, Vol.22 (1), p.1-204, Article 204

2023

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Improvement of 2,3-butanediol production by dCas9 gene expression system in Saccharomyces cerevisiae

Journal of bioscience and bioengineering, 2022-03, Vol.133 (3), p.208-212

2022

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Synthetic metabolic bypass for a metabolic toggle switch enhances acetyl-CoA supply for isopropanol production by Escherichia coli

Journal of bioscience and bioengineering, 2017-05, Vol.123 (5), p.625-633

2017

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Wickerhamiella bidentis sp. nov., a novel yeast species isolated from flowers and insects in Japan

International journal of systematic and evolutionary microbiology, 2023-03, Vol.73 (3)

2023

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Genetic engineering to enhance the Ehrlich pathway and alter carbon flux for increased isobutanol production from glucose by Saccharomyces cerevisiae

Journal of biotechnology, 2012-05, Vol.159 (1-2), p.32-37

2012

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RIKEN tandem mass spectral database (ReSpect) for phytochemicals: A plant-specific MS/MS-based data resource and database

Phytochemistry (Oxford), 2012-10, Vol.82, p.38-45

2012

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Repeated-batch fermentation of lignocellulosic hydrolysate to ethanol using a hybrid Saccharomyces cerevisiae strain metabolically engineered for tolerance to acetic and formic acids

Bioresource technology, 2011-09, Vol.102 (17), p.7917-7924

2011

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Increased carvone production in Escherichia coli by balancing limonene conversion enzyme expression via targeted quantification concatamer proteome analysis

Scientific reports, 2021-11, Vol.11 (1), p.22126-22126, Article 22126

2021

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Absolute quantitation of glycolytic intermediates reveals thermodynamic shifts in Saccharomyces cerevisiae strains lacking PFK1 or ZWF1 genes

Journal of bioscience and bioengineering, 2015-09, Vol.120 (3), p.280-286

2015

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Direct and quantitative analysis of altered metabolic flux distributions and cellular ATP production pathway in fumarate hydratase-diminished cells

Scientific reports, 2020-08, Vol.10 (1), p.13065-13065, Article 13065

2020

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Increased isobutanol production in Saccharomyces cerevisiae by eliminating competing pathways and resolving cofactor imbalance

Microbial cell factories, 2013-12, Vol.12 (1), p.119-119, Article 119

2013

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Comparative 13C‐metabolic flux analysis indicates elevation of ATP regeneration, carbon dioxide, and heat production in industrial Saccharomyces cerevisiae strains

Biotechnology journal, 2022-03, Vol.17 (3), p.n/a

2022

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Improved 2,3-Butanediol Production Rate of Metabolically Engineered Saccharomyces cerevisiae by Deletion of RIM15 and Activation of Pyruvate Consumption Pathway

International journal of molecular sciences, 2023-11, Vol.24 (22), p.16378

2023

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Metabolic engineering of mevalonate-producing Escherichia coli strains based on thermodynamic analysis

Metabolic engineering, 2018-05, Vol.47, p.1-9

2018

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Data Processing of Product Ion Spectra: Redundancy of Product Ion Spectra of Small Molecules in Data-Dependent Acquisition Dataset

Current metabolomics: Practical applications

Regular expressions of MS/MS spectra for partial annotation of metabolite features

Enhancement of oxidative and drought tolerance in Arabidopsis by overaccumulation of antioxidant flavonoids

Computational data mining method for isotopomer analysis in the quantitative assessment of metabolic reprogramming

Lipidome variation of industrial Saccharomyces cerevisiae strains analyzed by LC-QTOF/MS-based untargeted lipidomics

Rewiring of embryonic glucose metabolism via suppression of PFK-1 and aldolase during mouse chorioallantoic branching

Assessment of Protein Content and Phosphorylation Level in Synechocystis sp. PCC 6803 under Various Growth Conditions Using Quantitative Phosphoproteomic Analysis

Metabolome‐genome‐wide association study dissects genetic architecture for generating natural variation in rice secondary metabolism

Learning from quantitative data to understand central carbon metabolism

Survival of membrane-damaged Escherichia coli in a cytosol-mimicking solution

Improvement of ethanol and 2,3-butanediol production in Saccharomyces cerevisiae by ATP wasting

Improvement of 2,3-butanediol production by dCas9 gene expression system in Saccharomyces cerevisiae

Synthetic metabolic bypass for a metabolic toggle switch enhances acetyl-CoA supply for isopropanol production by Escherichia coli

Wickerhamiella bidentis sp. nov., a novel yeast species isolated from flowers and insects in Japan

Genetic engineering to enhance the Ehrlich pathway and alter carbon flux for increased isobutanol production from glucose by Saccharomyces cerevisiae

RIKEN tandem mass spectral database (ReSpect) for phytochemicals: A plant-specific MS/MS-based data resource and database

Repeated-batch fermentation of lignocellulosic hydrolysate to ethanol using a hybrid Saccharomyces cerevisiae strain metabolically engineered for tolerance to acetic and formic acids

Increased carvone production in Escherichia coli by balancing limonene conversion enzyme expression via targeted quantification concatamer proteome analysis

Absolute quantitation of glycolytic intermediates reveals thermodynamic shifts in Saccharomyces cerevisiae strains lacking PFK1 or ZWF1 genes

Direct and quantitative analysis of altered metabolic flux distributions and cellular ATP production pathway in fumarate hydratase-diminished cells

Increased isobutanol production in Saccharomyces cerevisiae by eliminating competing pathways and resolving cofactor imbalance

Comparative 13C‐metabolic flux analysis indicates elevation of ATP regeneration, carbon dioxide, and heat production in industrial Saccharomyces cerevisiae strains

Improved 2,3-Butanediol Production Rate of Metabolically Engineered Saccharomyces cerevisiae by Deletion of RIM15 and Activation of Pyruvate Consumption Pathway

Metabolic engineering of mevalonate-producing Escherichia coli strains based on thermodynamic analysis

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