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The effects of chromatin organization on variation in mutation rates in the genome

Nature reviews. Genetics, 2015-04, Vol.16 (4), p.213

2015

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Y and W Chromosome Assemblies: Approaches and Discoveries

Trends in genetics, 2017-04, Vol.33 (4), p.266-282

2017

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Age-related accumulation of de novo mitochondrial mutations in mammalian oocytes and somatic tissues

PLoS biology, 2020-07, Vol.18 (7), p.e3000745

2020

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Deciphering highly similar multigene family transcripts from Iso-Seq data with IsoCon

Nature communications, 2018-11, Vol.9 (1), p.4601-12, Article 4601

2018

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Non-B DNA: a major contributor to small- and large-scale variation in nucleotide substitution frequencies across the genome

Nucleic acids research, 2021-02, Vol.49 (3), p.1497

2021

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Bottleneck and selection in the germline and maternal age influence transmission of mitochondrial DNA in human pedigrees

Proceedings of the National Academy of Sciences - PNAS, 2019-12, Vol.116 (50), p.25172-25178

2019

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Dosage regulation, and variation in gene expression and copy number of human Y chromosome ampliconic genes

PLoS genetics, 2019-09, Vol.15 (9), p.e1008369-e1008369

2019

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Maternal age effect and severe germ-line bottleneck in the inheritance of human mitochondrial DNA

Proceedings of the National Academy of Sciences - PNAS, 2014-10, Vol.111 (43), p.15474-15479

2014

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Exploring the Effects of Mitonuclear Interactions on Mitochondrial DNA Gene Expression in Humans

Frontiers in genetics, 2022-06, Vol.13, p.797129-797129

2022

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The genome-wide determinants of human and chimpanzee microsatellite evolution

Genome Research, 2008-01, Vol.18 (1), p.30-38

2008

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A genome-wide analysis of common fragile sites: what features determine chromosomal instability in the human genome?

Genome research, 2012-06, Vol.22 (6), p.993

2012

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Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate

Genome research, 2018-12, Vol.28 (12), p.1767

2018

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Integration and Fixation Preferences of Human and Mouse Endogenous Retroviruses Uncovered with Functional Data Analysis

PLoS computational biology, 2016-06, Vol.12 (6), p.e1004956-e1004956

2016

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The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes

Genome research, 2013-05, Vol.23 (5), p.749

2013

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A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y

Genome research, 2016-04, Vol.26 (4), p.530

2016

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Accurate typing of short tandem repeats from genome-wide sequencing data and its applications

Genome research, 2015-05, Vol.25 (5), p.736

2015

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DiscoverY: a classifier for identifying Y chromosome sequences in male assemblies

BMC genomics, 2019-08, Vol.20 (1), p.641-641, Article 641

2019

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Child Weight Gain Trajectories Linked To Oral Microbiota Composition

Scientific reports, 2018-09, Vol.8 (1), p.14030-14, Article 14030

2018

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Family reunion via error correction: an efficient analysis of duplex sequencing data

BMC bioinformatics, 2020-03, Vol.21 (1), p.96-96, Article 96

2020

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Development and assessment of an optimized next-generation DNA sequencing approach for the mtgenome using the Illumina MiSeq

Forensic science international : genetics, 2014-11, Vol.13, p.20-29

2014

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Evolution and survival on eutherian sex chromosomes

PLoS genetics, 2009-07, Vol.5 (7), p.e1000568-e1000568

2009

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A matter of life or death: how microsatellites emerge in and vanish from the human genome

Genome research, 2011-12, Vol.21 (12), p.2038

2011

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The (r)evolution of SINE versus LINE distributions in primate genomes: sex chromosomes are important

Genome research, 2010-05, Vol.20 (5), p.600

2010

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Correcting palindromes in long reads after whole-genome amplification

BMC genomics, 2018-11, Vol.19 (1), p.798-798, Article 798

2018

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Deep-Coverage MPS Analysis of Heteroplasmic Variants within the mtGenome Allows for Frequent Differentiation of Maternal Relatives

Genes, 2018-02, Vol.9 (3), p.124

2018

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The effects of chromatin organization on variation in mutation rates in the genome

Y and W Chromosome Assemblies: Approaches and Discoveries

Age-related accumulation of de novo mitochondrial mutations in mammalian oocytes and somatic tissues

Deciphering highly similar multigene family transcripts from Iso-Seq data with IsoCon

Non-B DNA: a major contributor to small- and large-scale variation in nucleotide substitution frequencies across the genome

Bottleneck and selection in the germline and maternal age influence transmission of mitochondrial DNA in human pedigrees

Dosage regulation, and variation in gene expression and copy number of human Y chromosome ampliconic genes

Maternal age effect and severe germ-line bottleneck in the inheritance of human mitochondrial DNA

Exploring the Effects of Mitonuclear Interactions on Mitochondrial DNA Gene Expression in Humans

The genome-wide determinants of human and chimpanzee microsatellite evolution

A genome-wide analysis of common fragile sites: what features determine chromosomal instability in the human genome?

Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate

Integration and Fixation Preferences of Human and Mouse Endogenous Retroviruses Uncovered with Functional Data Analysis

The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes

A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y

Accurate typing of short tandem repeats from genome-wide sequencing data and its applications

DiscoverY: a classifier for identifying Y chromosome sequences in male assemblies

Child Weight Gain Trajectories Linked To Oral Microbiota Composition

Family reunion via error correction: an efficient analysis of duplex sequencing data

Development and assessment of an optimized next-generation DNA sequencing approach for the mtgenome using the Illumina MiSeq

Evolution and survival on eutherian sex chromosomes

A matter of life or death: how microsatellites emerge in and vanish from the human genome

The (r)evolution of SINE versus LINE distributions in primate genomes: sex chromosomes are important

Correcting palindromes in long reads after whole-genome amplification

Deep-Coverage MPS Analysis of Heteroplasmic Variants within the mtGenome Allows for Frequent Differentiation of Maternal Relatives

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