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Analysis of live cell images: Methods, tools and opportunities

Methods (San Diego, Calif.), 2017-02, Vol.115, p.65-79

2017

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Predictive models for pressure ulcers from intensive care unit electronic health records using Bayesian networks

BMC medical informatics and decision making, 2017-07, Vol.17 (Suppl 2), p.65-65, Article 65

2017

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Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge

BMC bioinformatics, 2019-12, Vol.20 (Suppl 24), p.669-669, Article 669

2019

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Metabolomics and Multi-Omics Integration: A Survey of Computational Methods and Resources

Metabolites, 2020-05, Vol.10 (5), p.202

2020

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Self-organizing maps with variable neighborhoods facilitate learning of chromatin accessibility signal shapes associated with regulatory elements

BMC bioinformatics, 2021-01, Vol.22 (1), p.35-35, Article 35

2021

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Spatial cell type composition in normal and Alzheimers human brains is revealed using integrated mouse and human single cell RNA sequencing

Scientific reports, 2020-10, Vol.10 (1), p.18014-18014, Article 18014

2020

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Improving Compound Activity Classification via Deep Transfer and Representation Learning

ACS omega, 2022-03, Vol.7 (11), p.9465-9483

2022

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Single-Cell Co-expression Analysis Reveals Distinct Functional Modules, Co-regulation Mechanisms and Clinical Outcomes

PLoS computational biology, 2016-04, Vol.12 (4), p.e1004892-e1004892

2016

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Canonical and atypical E2Fs regulate the mammalian endocycle

Nature cell biology, 2012-11, Vol.14 (11), p.1192

2012

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AZGP1 deficiency promotes angiogenesis in prostate cancer

Journal of translational medicine, 2024-04, Vol.22 (1), p.383-383

2024

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Deep learning-based automated pipeline for blood vessel detection and distribution analysis in multiplexed prostate cancer images

Frontiers in bioinformatics, 2024-01, Vol.3, p.1296667-1296667

2024

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An integrative analysis of regional gene expression profiles in the human brain

Methods (San Diego, Calif.), 2015-02, Vol.73, p.54-70

2015

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Tocotrienol vitamin E protects against preclinical canine ischemic stroke by inducing arteriogenesis

Journal of cerebral blood flow and metabolism, 2011-11, Vol.31 (11), p.2218-2230

2011

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Gene × smoking interactions on human brain gene expression: finding common mechanisms in adolescents and adults

Journal of child psychology and psychiatry, 2013-10, Vol.54 (10), p.1109-1119

2013

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Robust 3D reconstruction and identification of dendritic spines from optical microscopy imaging

Medical image analysis, 2009-02, Vol.13 (1), p.167-179

2009

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Fixing the Mercator Projection for the Internet Age

Computer (Long Beach, Calif.), 2014-01, Vol.47 (1), p.9-9

Machiraju, Raghu

2014

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IEEE_Xplore

Autonomous Computing Materials

ACS nano, 2021-03, Vol.15 (3), p.3586-3592

2021

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Integrative cancer patient stratification via subspace merging

Bioinformatics, 2019-05, Vol.35 (10), p.1653-1659

2019

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Breast cancer patient stratification using a molecular regularized consensus clustering method

Methods (San Diego, Calif.), 2014-06, Vol.67 (3), p.304-312

2014

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Vortex Visualization for Practical Engineering Applications

IEEE transactions on visualization and computer graphics, 2006-09, Vol.12 (5), p.957-964

2006

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IEEE_Xplore

Identification of recurrent combinatorial patterns of chromatin modifications at promoters across various tissue types

BMC bioinformatics, 2016-12, Vol.17 (Suppl 17), p.534-534, Article 534

2016

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Visual Exploration of Neural Document Embedding in Information Retrieval: Semantics and Feature Selection

IEEE transactions on visualization and computer graphics, 2019-06, Vol.25 (6), p.2181-2192

2019

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IEEE_Xplore

PATH-13. IMAGE-BASED PHENOTYPING OF GLIOMAS FOR CLINICAL USE

Neuro-oncology (Charlottesville, Va.), 2022-11, Vol.24 (Supplement_7), p.vii152-vii152

2022

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iGPSe: a visual analytic system for integrative genomic based cancer patient stratification

BMC bioinformatics, 2014-07, Vol.15 (1), p.203-203, Article 203

2014

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GRAPHIE: graph based histology image explorer

BMC bioinformatics, 2015-08, Vol.16 Suppl 11 (S11), p.S10-S10, Article S10

2015

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Analysis of live cell images: Methods, tools and opportunities

Predictive models for pressure ulcers from intensive care unit electronic health records using Bayesian networks

Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge

Metabolomics and Multi-Omics Integration: A Survey of Computational Methods and Resources

Self-organizing maps with variable neighborhoods facilitate learning of chromatin accessibility signal shapes associated with regulatory elements

Spatial cell type composition in normal and Alzheimers human brains is revealed using integrated mouse and human single cell RNA sequencing

Improving Compound Activity Classification via Deep Transfer and Representation Learning

Single-Cell Co-expression Analysis Reveals Distinct Functional Modules, Co-regulation Mechanisms and Clinical Outcomes

Canonical and atypical E2Fs regulate the mammalian endocycle

AZGP1 deficiency promotes angiogenesis in prostate cancer

Deep learning-based automated pipeline for blood vessel detection and distribution analysis in multiplexed prostate cancer images

An integrative analysis of regional gene expression profiles in the human brain

Tocotrienol vitamin E protects against preclinical canine ischemic stroke by inducing arteriogenesis

Gene × smoking interactions on human brain gene expression: finding common mechanisms in adolescents and adults

Robust 3D reconstruction and identification of dendritic spines from optical microscopy imaging

Fixing the Mercator Projection for the Internet Age

Autonomous Computing Materials

Integrative cancer patient stratification via subspace merging

Breast cancer patient stratification using a molecular regularized consensus clustering method

Vortex Visualization for Practical Engineering Applications

Identification of recurrent combinatorial patterns of chromatin modifications at promoters across various tissue types

Visual Exploration of Neural Document Embedding in Information Retrieval: Semantics and Feature Selection

PATH-13. IMAGE-BASED PHENOTYPING OF GLIOMAS FOR CLINICAL USE

iGPSe: a visual analytic system for integrative genomic based cancer patient stratification

GRAPHIE: graph based histology image explorer

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