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Intratumoral heterogeneity and clonal evolution in liver cancer

Nature communications, 2020-01, Vol.11 (1), p.291-291, Article 291

2020

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Identification of an Immune-specific Class of Hepatocellular Carcinoma, Based on Molecular Features

Gastroenterology (New York, N.Y. 1943), 2017-09, Vol.153 (3), p.812-826

2017

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Epigenetic regulation of brain region-specific microglia clearance activity

Nature neuroscience, 2018-08, Vol.21 (8), p.1049-1060

2018

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Massive parallel sequencing uncovers actionable FGFR2–PPHLN1 fusion and ARAF mutations in intrahepatic cholangiocarcinoma

Nature communications, 2015-01, Vol.6 (1), Article 6087

2015

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Tumor fitness, immune exhaustion and clinical outcomes: impact of immune checkpoint inhibitors

Scientific reports, 2020-03, Vol.10 (1), p.5062-5062, Article 5062

2020

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Gut microbiota density influences host physiology and is shaped by host and microbial factors

eLife, 2019-01, Vol.8

2019

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Insights into beta cell regeneration for diabetes via integration of molecular landscapes in human insulinomas

Nature communications, 2017-10, Vol.8 (1), p.767-15, Article 767

2017

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Transcriptomic characterization of cancer-testis antigens identifies MAGEA3 as a driver of tumor progression in hepatocellular carcinoma

PLoS genetics, 2021-06, Vol.17 (6), p.e1009589-e1009589

2021

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The transcriptomic response of cells to a drug combination is more than the sum of the responses to the monotherapies

eLife, 2020-09, Vol.9

2020

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Systems Genetic Analyses Highlight a TGFβ-FOXO3 Dependent Striatal Astrocyte Network Conserved across Species and Associated with Stress, Sleep, and Huntington's Disease

PLoS genetics, 2016-07, Vol.12 (7), p.e1006137-e1006137

2016

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Personalized Ovarian Cancer Disease Surveillance and Detection of Candidate Therapeutic Drug Target in Circulating Tumor DNA

Neoplasia (New York, N.Y.), 2014, Vol.16 (1), p.97-W29

2014

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Landscape of oncoviral genotype and co-infection via human papilloma and hepatitis B viral tumor in situ profiling

iScience, 2021-04, Vol.24 (4), p.102368-102368, Article 102368

2021

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Extracellular vesicles carry transcriptional ‘dark matter’ revealing tissue‐specific information

Journal of extracellular vesicles, 2024-08, Vol.13 (8), p.e12481-n/a

2024

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Open Problems in Extracellular RNA Data Analysis: Insights From an ERCC Online Workshop

Frontiers in genetics, 2022-01, Vol.12, p.778416-778416

2022

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A Systems Approach Identifies Networks and Genes Linking Sleep and Stress: Implications for Neuropsychiatric Disorders

Cell reports (Cambridge), 2015-05, Vol.11 (5), p.835-848

2015

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A temporal classifier predicts histopathology state and parses acute-chronic phasing in inflammatory bowel disease patients

Communications biology, 2023-01, Vol.6 (1), p.95-12, Article 95

2023

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Liquid biopsy in the clinical management of hepatocellular carcinoma

Gut, 2020-11, Vol.69 (11), p.2025-2034

2020

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Extracellular vesicles for early detection of hepatocellular carcinoma

ExRNA, 2022-08, Vol.4, p.19-19

2022

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Abstract 3381: Identifying tumor antigen-specific CD4+ T cell dysfunctional states by single cell transcriptomics in immunotherapy-treated cancer patients

Cancer research (Chicago, Ill.), 2020-08, Vol.80 (16_Supplement), p.3381-3381

2020

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STAR Chimeric Post for rapid detection of circular RNA and fusion transcripts

Bioinformatics, 2018-07, Vol.34 (14), p.2364-2370

2018

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Abstract 4558: Mapping tolerized T cell states to exhaustion phenotypes in NSCLC

Cancer research (Chicago, Ill.), 2019-07, Vol.79 (13_Supplement), p.4558-4558

2019

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Abstract 3415: Tumor fitness and immune exhaustion: Checkpoint vs endogenous settings

Cancer research (Chicago, Ill.), 2019-07, Vol.79 (13_Supplement), p.3415-3415

2019

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Massive parallel sequencing uncovers actionable FGFR2-PPHLN1 fusion and ARAF mutations in intrahepatic cholangiocarcinoma

Nature communications, 2015-01, Vol.6, p.6087-6087

2015

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Abstract 790: Coupled dynamics of drug synergy, gene expression, and alternative splicing in combination therapies in breast cancer

Cancer research (Chicago, Ill.), 2016-07, Vol.76 (14_Supplement), p.790-790

2016

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Intratumoral heterogeneity and clonal evolution in liver cancer

Identification of an Immune-specific Class of Hepatocellular Carcinoma, Based on Molecular Features

Epigenetic regulation of brain region-specific microglia clearance activity

A functional genomics predictive network model identifies regulators of inflammatory bowel disease

Massive parallel sequencing uncovers actionable FGFR2–PPHLN1 fusion and ARAF mutations in intrahepatic cholangiocarcinoma

Tumor fitness, immune exhaustion and clinical outcomes: impact of immune checkpoint inhibitors

Gut microbiota density influences host physiology and is shaped by host and microbial factors

Insights into beta cell regeneration for diabetes via integration of molecular landscapes in human insulinomas

Transcriptomic characterization of cancer-testis antigens identifies MAGEA3 as a driver of tumor progression in hepatocellular carcinoma

The transcriptomic response of cells to a drug combination is more than the sum of the responses to the monotherapies

Systems Genetic Analyses Highlight a TGFβ-FOXO3 Dependent Striatal Astrocyte Network Conserved across Species and Associated with Stress, Sleep, and Huntington's Disease

Personalized Ovarian Cancer Disease Surveillance and Detection of Candidate Therapeutic Drug Target in Circulating Tumor DNA

Landscape of oncoviral genotype and co-infection via human papilloma and hepatitis B viral tumor in situ profiling

Extracellular vesicles carry transcriptional ‘dark matter’ revealing tissue‐specific information

Open Problems in Extracellular RNA Data Analysis: Insights From an ERCC Online Workshop

A Systems Approach Identifies Networks and Genes Linking Sleep and Stress: Implications for Neuropsychiatric Disorders

A temporal classifier predicts histopathology state and parses acute-chronic phasing in inflammatory bowel disease patients

Liquid biopsy in the clinical management of hepatocellular carcinoma

Extracellular vesicles for early detection of hepatocellular carcinoma

Abstract 3381: Identifying tumor antigen-specific CD4+ T cell dysfunctional states by single cell transcriptomics in immunotherapy-treated cancer patients

STAR Chimeric Post for rapid detection of circular RNA and fusion transcripts

Abstract 4558: Mapping tolerized T cell states to exhaustion phenotypes in NSCLC

Abstract 3415: Tumor fitness and immune exhaustion: Checkpoint vs endogenous settings

Massive parallel sequencing uncovers actionable FGFR2-PPHLN1 fusion and ARAF mutations in intrahepatic cholangiocarcinoma

Abstract 790: Coupled dynamics of drug synergy, gene expression, and alternative splicing in combination therapies in breast cancer

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