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RNA-Seq differential expression analysis: An extended review and a software tool

PloS one, 2017-12, Vol.12 (12), p.e0190152-e0190152

2017

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BASiNET—BiologicAl Sequences NETwork: a case study on coding and non-coding RNAs identification

Nucleic acids research, 2018-09, Vol.46 (16), p.e96-e96

2018

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Letter on the results of the BASiNET method in the paper ‘A systematic evaluation of computational tools for lncRNA identification’

Briefings in bioinformatics, 2022-09, Vol.23 (5)

2022

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Assessing Active Learning Strategies to Improve the Quality Control of the Soybean Seed Vigor

IEEE transactions on industrial electronics (1982), 2021-02, Vol.68 (2), p.1675-1683

2021

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Brazilian bibliometric coauthorship networks

Journal of the Association for Information Science and Technology, 2014-07, Vol.65 (7), p.1424-1445

2014

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Analysis of co-authorship networks among Brazilian graduate programs in computer science

PloS one, 2022-01, Vol.17 (1), p.e0261200

2022

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Brazilian-adapted soybean Bradyrhizobium strains uncover IS elements with potential impact on biological nitrogen fixation

FEMS microbiology letters, 2019-06, Vol.366 (11), p.1

2019

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Temporal progress of gene expression analysis with RNA-Seq data: A review on the relationship between computational methods

Computational and structural biotechnology journal, 2023-01, Vol.21, p.86-98

2023

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A Feature Extraction Approach Based on LBP Operator and Complex Networks for Face Recognition

Progress in Pattern Recognition, Image Analysis, Computer Vision, and Applications, p.440-450

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A Simplified Complex Network-Based Approach to mRNA and ncRNA Transcript Classification

Advances in Bioinformatics and Computational Biology, 2020, Vol.12558, p.192-203

2020

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Feature selection environment for genomic applications

BMC bioinformatics, 2008-10, Vol.9 (1), p.451-451, Article 451

2008

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Feature Extraction of Long Non-coding RNAs: A Fourier and Numerical Mapping Approach

Progress in Pattern Recognition, Image Analysis, Computer Vision, and Applications, p.469-479

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Biological Sequence Analysis Using Complex Networks and Entropy Maximization: A Case Study in SARS-CoV-2

Ambient Intelligence in Health Care, 2022, Vol.317, p.459-468

2022

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Inference of gene regulatory networks from time series by Tsallis entropy

BMC systems biology, 2011-05, Vol.5 (74), p.61-61, Article 61

2011

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Evolutionary computation and swarm intelligence for the inference of gene regulatory networks

International journal of innovative computing and applications, 2016, Vol.7 (4), p.225

2016

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Feature selection environment for genomic applications

BMC bioinformatics, 2009-09, Vol.10 (1), p.285-285

2009

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A database for the taxonomic and phylogenetic identification of the genus Bradyrhizobium using multilocus sequence analysis

BMC genomics, 2015-05, Vol.16 Suppl 5 (S5), p.S10-S10, Article S10

2015

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Computational Analysis of Transposable Elements and CircRNAs in Plants

Methods in molecular biology (Clifton, N.J.), 2021, Vol.2362, p.147

2021

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An Efficient Approach to Explore and Discriminate Anomalous Regions in Bacterial Genomes Based on Maximum Entropy

Journal of computational biology, 2017-11, Vol.24 (11), p.1125-1133

2017

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Combining SURF descriptor and complex networks for face recognition

2016 9th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI), 2016, p.275-279

2016

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A Feature Selection Approach for Evaluate the Inference of GRNs Through Biological Data Integration - A Case Study on A. Thaliana

Progress in Pattern Recognition, Image Analysis, Computer Vision, and Applications, p.667-675

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A feature extraction approach based on complex networks for genomic sequences recognition

2016 9th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI), 2016, p.1803-1807

2016

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A Power Law Semantic Similarity from Gene Ontology

Advances in Bioinformatics and Computational Biology, 2023, Vol.13954, p.123-135

2023

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Interpretability with Relevance Aggregation in Neural Networks for Absenteeism Prediction

2022 IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI), 2022, p.01-04

2022

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Evolutionary computation and swarm intelligence for the inference of gene regulatory networks

International journal of innovative computing and applications, 2016, Vol.7 (4), p.225

2016

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RNA-Seq differential expression analysis: An extended review and a software tool

BASiNET—BiologicAl Sequences NETwork: a case study on coding and non-coding RNAs identification

Letter on the results of the BASiNET method in the paper ‘A systematic evaluation of computational tools for lncRNA identification’

Assessing Active Learning Strategies to Improve the Quality Control of the Soybean Seed Vigor

Brazilian bibliometric coauthorship networks

Analysis of co-authorship networks among Brazilian graduate programs in computer science

Brazilian-adapted soybean Bradyrhizobium strains uncover IS elements with potential impact on biological nitrogen fixation

Temporal progress of gene expression analysis with RNA-Seq data: A review on the relationship between computational methods

A Feature Extraction Approach Based on LBP Operator and Complex Networks for Face Recognition

A Simplified Complex Network-Based Approach to mRNA and ncRNA Transcript Classification

Feature selection environment for genomic applications

Feature Extraction of Long Non-coding RNAs: A Fourier and Numerical Mapping Approach

Biological Sequence Analysis Using Complex Networks and Entropy Maximization: A Case Study in SARS-CoV-2

Inference of gene regulatory networks from time series by Tsallis entropy

Evolutionary computation and swarm intelligence for the inference of gene regulatory networks

Feature selection environment for genomic applications

A database for the taxonomic and phylogenetic identification of the genus Bradyrhizobium using multilocus sequence analysis

Computational Analysis of Transposable Elements and CircRNAs in Plants

An Efficient Approach to Explore and Discriminate Anomalous Regions in Bacterial Genomes Based on Maximum Entropy

Combining SURF descriptor and complex networks for face recognition

A Feature Selection Approach for Evaluate the Inference of GRNs Through Biological Data Integration - A Case Study on A. Thaliana

A feature extraction approach based on complex networks for genomic sequences recognition

A Power Law Semantic Similarity from Gene Ontology

Interpretability with Relevance Aggregation in Neural Networks for Absenteeism Prediction

Evolutionary computation and swarm intelligence for the inference of gene regulatory networks

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