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Experimental validation of methods for differential gene expression analysis and sample pooling in RNA-seq

BMC genomics, 2015-07, Vol.16 (1), p.548-548, Article 548

2015

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Galaxy: A Web‐Based Genome Analysis Tool for Experimentalists

Current protocols in molecular biology (Print), 2010-01, Vol.89 (1), p.19.10.1-19.10.21

2010

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Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway

Human molecular genetics, 2009-12, Vol.18 (23), p.4677-4687

2009

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Automated Detection and Classification of Type 1 Versus Type 2 Diabetes Using Electronic Health Record Data

Diabetes care, 2013-04, Vol.36 (4), p.914-921

2013

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Extracting principal diagnosis, co-morbidity and smoking status for asthma research: evaluation of a natural language processing system

BMC medical informatics and decision making, 2006-07, Vol.6 (1), p.30-30, Article 30

2006

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Balancing Selection Is the Main Force Shaping the Evolution of Innate Immunity Genes

The Journal of immunology (1950), 2008-07, Vol.181 (2), p.1315-1322

2008

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Time course-dependent changes in the transcriptome of human skeletal muscle during recovery from endurance exercise: from inflammation to adaptive remodeling

Journal of applied physiology (1985), 2014-02, Vol.116 (3), p.274-287

2014

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Transcriptome analysis of neutrophils after endurance exercise reveals novel signaling mechanisms in the immune response to physiological stress

Journal of applied physiology (1985), 2013-06, Vol.114 (12), p.1677-1688

2013

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The glucocorticoid receptor heterocomplex gene STIP1 is associated with improved lung function in asthmatic subjects treated with inhaled corticosteroids

Journal of allergy and clinical immunology, 2009-06, Vol.123 (6), p.1376-1383.e7

2009

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Mapping of numerous disease-associated expression polymorphisms in primary peripheral blood CD4+ lymphocytes

Human molecular genetics, 2010-12, Vol.19 (23), p.4745-4757

2010

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Identification of 54 large deletions/duplications in TSC1 and TSC2 using MLPA, and genotype-phenotype correlations

Human genetics, 2007-05, Vol.121 (3-4), p.389-400

2007

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Automated identification of acute hepatitis B using electronic medical record data to facilitate public health surveillance

PloS one, 2008-07, Vol.3 (7), p.e2626-e2626

2008

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clues : An R Package for Nonparametric Clustering Based on Local Shrinking

Journal of statistical software, 2010-02, Vol.33 (4)

2010

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Assessing the Reproducibility of Asthma Candidate Gene Associations, Using Genome-wide Data

American journal of respiratory and critical care medicine, 2009-06, Vol.179 (12), p.1084-1090

2009

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FCER2 : A pharmacogenetic basis for severe exacerbations in children with asthma

Journal of allergy and clinical immunology, 2007-12, Vol.120 (6), p.1285-1291

2007

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Genetic Determinants of Emphysema Distribution in the National Emphysema Treatment Trial

American journal of respiratory and critical care medicine, 2007-07, Vol.176 (1), p.42-48

2007

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Integrating Clinical Practice and Public Health Surveillance Using Electronic Medical Record Systems

American journal of preventive medicine, 2012-06, Vol.42 (6), p.S154-S162

2012

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Minimal Haplotype Tagging

Proceedings of the National Academy of Sciences - PNAS, 2003-08, Vol.100 (17), p.9900-9905

2003

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ADAM33 polymorphisms and phenotype associations in childhood asthma

Journal of allergy and clinical immunology, 2004-06, Vol.113 (6), p.1071-1078

2004

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Genetic Association Analysis of Functional Impairment in Chronic Obstructive Pulmonary Disease

American journal of respiratory and critical care medicine, 2006-05, Vol.173 (9), p.977-984

2006

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Lung function in type 2 diabetes: the Normative Aging Study

Respiratory medicine, 2005-12, Vol.99 (12), p.1583-1590

2005

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Single nucleotide polymorphisms in innate immunity genes: abundant variation and potential role in complex human disease

Immunological reviews, 2002-12, Vol.190 (1), p.9-25

2002

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Family-based association analysis of β2-adrenergic receptor polymorphisms in the Childhood Asthma Management Program

Journal of allergy and clinical immunology, , Vol.112 (5), p.870-876

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Association between Toll-Like Receptor Gene Cluster (TLR6, TLR1, and TLR10) and Prostate Cancer

Cancer epidemiology, biomarkers & prevention, 2007-10, Vol.16 (10), p.1982-1989

2007

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Experimental validation of methods for differential gene expression analysis and sample pooling in RNA-seq

Galaxy: A Web‐Based Genome Analysis Tool for Experimentalists

Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway

Automated Detection and Classification of Type 1 Versus Type 2 Diabetes Using Electronic Health Record Data

Extracting principal diagnosis, co-morbidity and smoking status for asthma research: evaluation of a natural language processing system

Genome-wide Association Analysis Identifies PDE4D as an Asthma-Susceptibility Gene

Balancing Selection Is the Main Force Shaping the Evolution of Innate Immunity Genes

Time course-dependent changes in the transcriptome of human skeletal muscle during recovery from endurance exercise: from inflammation to adaptive remodeling

Transcriptome analysis of neutrophils after endurance exercise reveals novel signaling mechanisms in the immune response to physiological stress

The glucocorticoid receptor heterocomplex gene STIP1 is associated with improved lung function in asthmatic subjects treated with inhaled corticosteroids

Mapping of numerous disease-associated expression polymorphisms in primary peripheral blood CD4+ lymphocytes

Identification of 54 large deletions/duplications in TSC1 and TSC2 using MLPA, and genotype-phenotype correlations

Automated identification of acute hepatitis B using electronic medical record data to facilitate public health surveillance

clues : An R Package for Nonparametric Clustering Based on Local Shrinking

Assessing the Reproducibility of Asthma Candidate Gene Associations, Using Genome-wide Data

FCER2 : A pharmacogenetic basis for severe exacerbations in children with asthma

Genetic Determinants of Emphysema Distribution in the National Emphysema Treatment Trial

Integrating Clinical Practice and Public Health Surveillance Using Electronic Medical Record Systems

Minimal Haplotype Tagging

ADAM33 polymorphisms and phenotype associations in childhood asthma

Genetic Association Analysis of Functional Impairment in Chronic Obstructive Pulmonary Disease

Lung function in type 2 diabetes: the Normative Aging Study

Single nucleotide polymorphisms in innate immunity genes: abundant variation and potential role in complex human disease

Family-based association analysis of β2-adrenergic receptor polymorphisms in the Childhood Asthma Management Program

Association between Toll-Like Receptor Gene Cluster (TLR6, TLR1, and TLR10) and Prostate Cancer

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