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Single-cell mutation identification via phylogenetic inference

Nature communications, 2018-12, Vol.9 (1), p.5144-8, Article 5144

2018

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Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data

Nature communications, 2019-06, Vol.10 (1), p.2750-12, Article 2750

2019

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Joint inference of exclusivity patterns and recurrent trajectories from tumor mutation trees

Nature communications, 2023-06, Vol.14 (1), p.3676-3676, Article 3676

2023

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Single-cell sequencing data reveal widespread recurrence and loss of mutational hits in the life histories of tumors

Genome research, 2017-11, Vol.27 (11), p.1885-1894

2017

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Bayesian Structure Learning and Sampling of Bayesian Networks with the R Package BiDAG

Journal of statistical software, 2023, Vol.105 (9), p.1-31

2023

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Quaternions and Rotation Sequences: A Primer with Applications to Orbits, Aerospace and Virtual Reality

JACK B. KUIPERS

2020

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COMPASS: joint copy number and mutation phylogeny reconstruction from amplicon single-cell sequencing data

Nature communications, 2023-08, Vol.14 (1), p.4921-4921, Article 4921

2023

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Multi-omics subtyping of hepatocellular carcinoma patients using a Bayesian network mixture model

PLoS computational biology, 2022-09, Vol.18 (9), p.e1009767-e1009767

2022

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Predicting colorectal cancer risk from adenoma detection via a two-type branching process model

PLoS computational biology, 2020-02, Vol.16 (2), p.e1007552-e1007552

2020

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The variance of causal effect estimators for binary v-structures

Journal of causal inference, 2022-05, Vol.10 (1), p.90-105

2022

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Efficient semiclassical approach for time delays

New journal of physics, 2014-12, Vol.16 (12), p.123018-50

2014

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Mutational interactions define novel cancer subgroups

Nature communications, 2018-10, Vol.9 (1), p.4353-10, Article 4353

2018

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SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data

Genome Biology, 2022-11, Vol.23 (1), p.248-33, Article 248

2022

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Partition MCMC for Inference on Acyclic Digraphs

Journal of the American Statistical Association, 2017-03, Vol.112 (517), p.282-299

2017

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Uniform random generation of large acyclic digraphs

Statistics and computing, 2015-03, Vol.25 (2), p.227-242

2015

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Statistical tests for intra-tumour clonal co-occurrence and exclusivity

PLoS computational biology, 2021-12, Vol.17 (12), p.e1009036-e1009036

2021

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Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C

PLoS computational biology, 2021-09, Vol.17 (9), p.e1008363-e1008363

2021

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scAmpi-A versatile pipeline for single-cell RNA-seq analysis from basics to clinics

PLoS computational biology, 2022-06, Vol.18 (6), p.e1010097-e1010097

2022

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Computational Model Reveals a Stochastic Mechanism behind Germinal Center Clonal Bursts

Cells (Basel, Switzerland), 2020-06, Vol.9 (6), p.1448

2020

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Tree inference for single-cell data

Genome Biology, 2016-05, Vol.17 (1), p.86-86, Article 86

2016

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Author Correction: Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics

Nature communications, 2021-05, Vol.12 (1), p.2823-2823, Article 2823

2021

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Spatial Distribution of Private Gene Mutations in Clear Cell Renal Cell Carcinoma

Cancers, 2021-04, Vol.13 (9), p.2163

2021

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Efficient Sampling and Structure Learning of Bayesian Networks

Journal of computational and graphical statistics, 2022-07, Vol.31 (3), p.639-650

2022

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Publisher Correction: Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics

Nature communications, 2020-11, Vol.11 (1), p.5996-5996, Article 5996

2020

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Advances in understanding tumour evolution through single-cell sequencing

Biochimica et biophysica acta. Reviews on cancer, 2017-04, Vol.1867 (2), p.127-138

2017

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Single-cell mutation identification via phylogenetic inference

Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data

Joint inference of exclusivity patterns and recurrent trajectories from tumor mutation trees

Single-cell sequencing data reveal widespread recurrence and loss of mutational hits in the life histories of tumors

Bayesian Structure Learning and Sampling of Bayesian Networks with the R Package BiDAG

Quaternions and Rotation Sequences: A Primer with Applications to Orbits, Aerospace and Virtual Reality

COMPASS: joint copy number and mutation phylogeny reconstruction from amplicon single-cell sequencing data

Multi-omics subtyping of hepatocellular carcinoma patients using a Bayesian network mixture model

Predicting colorectal cancer risk from adenoma detection via a two-type branching process model

The variance of causal effect estimators for binary v-structures

Efficient semiclassical approach for time delays

Mutational interactions define novel cancer subgroups

SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data

Partition MCMC for Inference on Acyclic Digraphs

Uniform random generation of large acyclic digraphs

Statistical tests for intra-tumour clonal co-occurrence and exclusivity

Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C

scAmpi-A versatile pipeline for single-cell RNA-seq analysis from basics to clinics

Computational Model Reveals a Stochastic Mechanism behind Germinal Center Clonal Bursts

Tree inference for single-cell data

Author Correction: Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics

Spatial Distribution of Private Gene Mutations in Clear Cell Renal Cell Carcinoma

Efficient Sampling and Structure Learning of Bayesian Networks

Publisher Correction: Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics

Advances in understanding tumour evolution through single-cell sequencing

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