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MIScnn: a framework for medical image segmentation with convolutional neural networks and deep learning

BMC medical imaging, 2021-01, Vol.21 (1), p.12-12, Article 12

2021

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Towards a guideline for evaluation metrics in medical image segmentation

BMC research notes, 2022-06, Vol.15 (1), p.1-210, Article 210

2022

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Data-dependent visualization of biological networks in the web-browser with NDExEdit

PLoS computational biology, 2022-06, Vol.18 (6), p.e1010205-e1010205

2022

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Robust chest CT image segmentation of COVID-19 lung infection based on limited data

Informatics in medicine unlocked, 2021, Vol.25, p.100681-100681, Article 100681

2021

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German Medical Named Entity Recognition Model and Data Set Creation Using Machine Translation and Word Alignment: Algorithm Development and Validation

JMIR formative research, 2023-02, Vol.7, p.e39077-e39077

2023

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An Analysis on Ensemble Learning Optimized Medical Image Classification With Deep Convolutional Neural Networks

IEEE access, 2022, Vol.10, p.66467-66480

2022

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Multipath: An R Package to Generate Integrated Reproducible Pathway Models

Biology (Basel, Switzerland), 2020-12, Vol.9 (12), p.483

2020

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mully : An R Package to Create, Modify and Visualize Multilayered Graphs

Genes, 2018-10, Vol.9 (11), p.519

2018

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Explaining decisions of graph convolutional neural networks: patient-specific molecular subnetworks responsible for metastasis prediction in breast cancer

Genome medicine, 2021-03, Vol.13 (1), p.42-42, Article 42

2021

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Estrogen-Dependent Gene Transcription in Human Breast Cancer Cells Relies upon Proteasome-Dependent Monoubiquitination of Histone H2B

Cancer research (Chicago, Ill.), 2011-09, Vol.71 (17), p.5739-5753

2011

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The Histone H2B Monoubiquitination Regulatory Pathway Is Required for Differentiation of Multipotent Stem Cells

Molecular cell, 2012-06, Vol.46 (5), p.705-713

2012

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Multilayer networks: aspects, implementations, and application in biomedicine

Big data analytics, 2020-07, Vol.5 (1), p.1-18, Article 2

2020

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DrNote: An open medical annotation service

PLOS digital health, 2022-08, Vol.1 (8), p.e0000086-e0000086

2022

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Plasma Biomarkers of Myocardial Fibrosis and Remodeling in Terminal Heart Failure Patients Supported by Mechanical Circulatory Support Devices

The Journal of heart and lung transplantation, 2008-06, Vol.27 (6), p.589-596

2008

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Identification of a microRNA expression signature for chemoradiosensitivity of colorectal cancer cells, involving miRNAs-320a, -224, -132 and let7g

Radiotherapy and oncology, 2013-09, Vol.108 (3), p.451-457

2013

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Silencing of the Wnt transcription factor TCF4 sensitizes colorectal cancer cells to (chemo-) radiotherapy

Carcinogenesis (New York), 2011-12, Vol.32 (12), p.1824-1831

2011

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rBiopaxParser--an R package to parse, modify and visualize BioPAX data

Bioinformatics, 2013-02, Vol.29 (4), p.520-522

2013

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Annotated dataset creation through large language models for non-english medical NLP

Journal of biomedical informatics, 2023-09, Vol.145, p.104478-104478, Article 104478

2023

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The histone methyltransferase DOT1L is required for proper DNA damage response, DNA repair, and modulates chemotherapy responsiveness

Clinical epigenetics, 2019-01, Vol.11 (1), p.4-4, Article 4

2019

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Novel biomarkers in human terminal heart failure and under mechanical circulatory support

Biomarkers, 2011-07, Vol.16 (S1), p.S31-S41

2011

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MISM: A Medical Image Segmentation Metric for Evaluation of Weak Labeled Data

Diagnostics (Basel), 2023-08, Vol.13 (16), p.2618

2023

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A Gene Expression Signature for Chemoradiosensitivity of Colorectal Cancer Cells

International journal of radiation oncology, biology, physics, 2010-11, Vol.78 (4), p.1184-1192

2010

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Incorporating digitally derived endpoints within clinical development programs by leveraging prior work

NPJ digital medicine, 2023-08, Vol.6 (1), p.139-139, Article 139

2023

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Prognostic Value of MicroRNAs in Preoperative Treated Rectal Cancer

International journal of molecular sciences, 2016-04, Vol.17 (4), p.568-568

2016

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Network-Based Approaches Reveal Potential Therapeutic Targets for Host-Directed Antileishmanial Therapy Driving Drug Repurposing

Microbiology spectrum, 2021-10, Vol.9 (2), p.e0101821-e0101821

2021

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MIScnn: a framework for medical image segmentation with convolutional neural networks and deep learning

Towards a guideline for evaluation metrics in medical image segmentation

Data-dependent visualization of biological networks in the web-browser with NDExEdit

Robust chest CT image segmentation of COVID-19 lung infection based on limited data

German Medical Named Entity Recognition Model and Data Set Creation Using Machine Translation and Word Alignment: Algorithm Development and Validation

An Analysis on Ensemble Learning Optimized Medical Image Classification With Deep Convolutional Neural Networks

Multipath: An R Package to Generate Integrated Reproducible Pathway Models

mully : An R Package to Create, Modify and Visualize Multilayered Graphs

Explaining decisions of graph convolutional neural networks: patient-specific molecular subnetworks responsible for metastasis prediction in breast cancer

Estrogen-Dependent Gene Transcription in Human Breast Cancer Cells Relies upon Proteasome-Dependent Monoubiquitination of Histone H2B

The Histone H2B Monoubiquitination Regulatory Pathway Is Required for Differentiation of Multipotent Stem Cells

Multilayer networks: aspects, implementations, and application in biomedicine

DrNote: An open medical annotation service

Plasma Biomarkers of Myocardial Fibrosis and Remodeling in Terminal Heart Failure Patients Supported by Mechanical Circulatory Support Devices

Identification of a microRNA expression signature for chemoradiosensitivity of colorectal cancer cells, involving miRNAs-320a, -224, -132 and let7g

Silencing of the Wnt transcription factor TCF4 sensitizes colorectal cancer cells to (chemo-) radiotherapy

rBiopaxParser--an R package to parse, modify and visualize BioPAX data

Annotated dataset creation through large language models for non-english medical NLP

The histone methyltransferase DOT1L is required for proper DNA damage response, DNA repair, and modulates chemotherapy responsiveness

Novel biomarkers in human terminal heart failure and under mechanical circulatory support

MISM: A Medical Image Segmentation Metric for Evaluation of Weak Labeled Data

A Gene Expression Signature for Chemoradiosensitivity of Colorectal Cancer Cells

Incorporating digitally derived endpoints within clinical development programs by leveraging prior work

Prognostic Value of MicroRNAs in Preoperative Treated Rectal Cancer

Network-Based Approaches Reveal Potential Therapeutic Targets for Host-Directed Antileishmanial Therapy Driving Drug Repurposing

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