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Structural and sequence diversity of eukaryotic transposable elements

Genes & Genetic Systems, 2019/12/01, Vol.94(6), pp.233-252

Kojima, Kenji K.

2019

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Repbase Update, a database of repetitive elements in eukaryotic genomes

Mobile DNA, 2015-06, Vol.6 (1), p.11-11, Article 11

2015

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Human transposable elements in Repbase: genomic footprints from fish to humans

Mobile DNA, 2018-01, Vol.9 (1), p.2-2, Article 2

Kojima, Kenji K

2018

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Helenus and Ajax , Two Groups of Non-Autonomous LTR Retrotransposons, Represent a New Type of Small RNA Gene-Derived Mobile Elements

Biology (Basel, Switzerland), 2024-02, Vol.13 (2), p.119

Kojima, Kenji K

2024

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Diversity and Evolution of DNA Transposons Targeting Multicopy Small RNA Genes from Actinopterygian Fish

Biology (Basel, Switzerland), 2022-01, Vol.11 (2), p.166

Kojima, Kenji K

2022

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The Wide Distribution and Change of Target Specificity of R2 Non-LTR Retrotransposons in Animals

PloS one, 2016-09, Vol.11 (9), p.e0163496-e0163496

2016

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Next Generation Sequencing Provides Rapid Access to the Genome of Puccinia striiformis f. sp. tritici, the Causal Agent of Wheat Stripe Rust

PloS one, 2011-08, Vol.6 (8), p.e24230-e24230

2011

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Hagfish genome reveals parallel evolution of 7SL RNA-derived SINEs

Mobile DNA, 2020-05, Vol.11 (1), p.18-18, Article 18

Kojima, Kenji K

2020

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AcademH , a lineage of Academ DNA transposons encoding helicase found in animals and fungi

Mobile DNA, 2020-04, Vol.11 (1), p.15-15, Article 15

Kojima, Kenji K

2020

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A superfamily of DNA transposons targeting multicopy small RNA genes

PloS one, 2013-07, Vol.8 (7), p.e68260

2013

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A Novel Approach to Helicobacter pylori Pan-Genome Analysis for Identification of Genomic Islands

PloS one, 2016-08, Vol.11 (8), p.e0159419-e0159419

2016

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IS481EU Shows a New Connection between Eukaryotic and Prokaryotic DNA Transposons

Biology (Basel, Switzerland), 2023-02, Vol.12 (3), p.365

2023

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A unique eukaryotic lineage of composite-like DNA transposons encoding a DDD/E transposase and a His-Me finger homing endonuclease

Mobile DNA, 2022-10, Vol.13 (1), p.1-24, Article 24

2022

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Families of transposable elements, population structure and the origin of species

Biology direct, 2011-09, Vol.6 (1), p.44-44

2011

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LINEs Contribute to the Origins of Middle Bodies of SINEs besides 3' Tails

Genome biology and evolution, 2018-01, Vol.10 (1), p.370-379

Kojima, Kenji K

2018

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Daidara : A gigantic Gypsy LTR retrotransposon lineage in the springtail Allacma fusca genome

Genes to cells : devoted to molecular & cellular mechanisms, 2023-10, Vol.28 (10), p.746-752

Kojima, Kenji K.

2023

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Transmission of the PabI family of restriction DNA glycosylase genes: mobility and long-term inheritance

BMC genomics, 2015-10, Vol.16 (1), p.817-817, Article 817

2015

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Crypton transposons: identification of new diverse families and ancient domestication events

Mobile DNA, 2011-10, Vol.2 (1), p.12-12

2011

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Bioinformatic and Molecular Analysis of Satellite Repeat Diversity in Vaccinium Genomes

Genes, 2020-05, Vol.11 (5), p.527

2020

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Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages

The ISME Journal, 2016-05, Vol.10 (5), p.1134-1146

2016

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Base-excision restriction enzymes: expanding the world of epigenetic immune systems

DNA research, 2023-08, Vol.30 (4)

2023

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Genomic comparison between Staphylococcus aureus GN strains clinically isolated from a familial infection case: IS1272 transposition through a novel inverted repeat-replacing mechanism

PloS one, 2017-11, Vol.12 (11), p.e0187288-e0187288

2017

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Evolution and gene capture in ancient endogenous retroviruses - insights from the crocodilian genomes

Retrovirology, 2014-12, Vol.11 (1), p.71-71, Article 71

2014

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Long-term inheritance of the 28S rDNA-specific retrotransposon R2

Molecular biology and evolution, 2005-11, Vol.22 (11), p.2157-2165

2005

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Different integration site structures between L1 protein-mediated retrotransposition in cis and retrotransposition in trans

Mobile DNA, 2010-07, Vol.1 (1), p.17-17

Kojima, Kenji K

2010

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Structural and sequence diversity of eukaryotic transposable elements

Repbase Update, a database of repetitive elements in eukaryotic genomes

Human transposable elements in Repbase: genomic footprints from fish to humans

Helenus and Ajax , Two Groups of Non-Autonomous LTR Retrotransposons, Represent a New Type of Small RNA Gene-Derived Mobile Elements

Diversity and Evolution of DNA Transposons Targeting Multicopy Small RNA Genes from Actinopterygian Fish

The Wide Distribution and Change of Target Specificity of R2 Non-LTR Retrotransposons in Animals

Next Generation Sequencing Provides Rapid Access to the Genome of Puccinia striiformis f. sp. tritici, the Causal Agent of Wheat Stripe Rust

Hagfish genome reveals parallel evolution of 7SL RNA-derived SINEs

AcademH , a lineage of Academ DNA transposons encoding helicase found in animals and fungi

A superfamily of DNA transposons targeting multicopy small RNA genes

A Novel Approach to Helicobacter pylori Pan-Genome Analysis for Identification of Genomic Islands

IS481EU Shows a New Connection between Eukaryotic and Prokaryotic DNA Transposons

A unique eukaryotic lineage of composite-like DNA transposons encoding a DDD/E transposase and a His-Me finger homing endonuclease

Families of transposable elements, population structure and the origin of species

LINEs Contribute to the Origins of Middle Bodies of SINEs besides 3' Tails

Daidara : A gigantic Gypsy LTR retrotransposon lineage in the springtail Allacma fusca genome

Transmission of the PabI family of restriction DNA glycosylase genes: mobility and long-term inheritance

Crypton transposons: identification of new diverse families and ancient domestication events

Bioinformatic and Molecular Analysis of Satellite Repeat Diversity in Vaccinium Genomes

Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages

Base-excision restriction enzymes: expanding the world of epigenetic immune systems

Genomic comparison between Staphylococcus aureus GN strains clinically isolated from a familial infection case: IS1272 transposition through a novel inverted repeat-replacing mechanism

Evolution and gene capture in ancient endogenous retroviruses - insights from the crocodilian genomes

Long-term inheritance of the 28S rDNA-specific retrotransposon R2

Different integration site structures between L1 protein-mediated retrotransposition in cis and retrotransposition in trans

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