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Integration of transcriptomics and metabolomics data specifies the metabolic response of Chlamydomonas to rapamycin treatment

The Plant journal : for cell and molecular biology, 2015-03, Vol.81 (5), p.822-835

2015

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Identification and Mode of Inheritance of Quantitative Trait Loci for Secondary Metabolite Abundance in Tomato

The Plant cell, 2015-03, Vol.27 (3), p.485-512

2015

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Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom

Nature communications, 2019-10, Vol.10 (1), p.4552-14, Article 4552

2019

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Metabolic variation between japonica and indica rice cultivars as revealed by non-targeted metabolomics

Scientific reports, 2014-05, Vol.4 (1), p.5067-5067, Article 5067

2014

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Aclonifen targets solanesyl diphosphate synthase, representing a novel mode of action for herbicides

Pest management science, 2020-10, Vol.76 (10), p.3377-3388

2020

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Impact of the Carbon and Nitrogen Supply on Relationships and Connectivity between Metabolism and Biomass in a Broad Panel of Arabidopsis Accessions

Plant physiology (Bethesda), 2013-05, Vol.162 (1), p.347-363

2013

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Concurrent conditional clustering of multiple networks: COCONETS

PloS one, 2014-08, Vol.9 (8), p.e103637-e103637

2014

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A network property necessary for concentration robustness

Nature communications, 2016-10, Vol.7 (1), p.13255-13255, Article 13255

2016

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Structured patterns in geographic variability of metabolic phenotypes in Arabidopsis thaliana

Nature communications, 2012-12, Vol.3 (1), p.1319, Article 1319

2012

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Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana

BMC genomics, 2010-07, Vol.11 (1), p.411-411, Article 411

2010

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Dynamic regulatory on/off minimization for biological systems under internal temporal perturbations

BMC systems biology, 2012-03, Vol.6 (1), p.16-16

2012

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Integration of metabolomics data into metabolic networks

Frontiers in plant science, 2015-02, Vol.6, p.49-49

2015

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iReMet-flux: constraint-based approach for integrating relative metabolite levels into a stoichiometric metabolic models

Bioinformatics (Oxford, England), 2016-09, Vol.32 (17), p.i755-i762

2016

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Impact of the Carbon and Nitrogen Supply on Relationships and Connectivity between Metabolism and Biomass in a Broad Panel of Arabidopsis Accessions1[W][OA]

Plant physiology (Bethesda), 2013-05, Vol.162 (1), p.347-363

2013

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Data Integration through Proximity-Based Networks Provides Biological Principles of Organization across Scales

The Plant cell, 2013-06, Vol.25 (6), p.1917-1927

2013

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Differential metabolic and coexpression networks of plant metabolism

Trends in plant science, 2015-05, Vol.20 (5), p.266-268

2015

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Metabolic efficiency underpins performance trade-offs in growth of Arabidopsis thaliana

Nature communications, 2014-03, Vol.5 (1), p.3537-3537, Article 3537

2014

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Model-based Confirmation of Alternative Substrates of Mitochondrial Electron Transport Chain

The Journal of biological chemistry, 2012-03, Vol.287 (14), p.11122-11131

2012

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Exploring natural variation of photosynthetic, primary metabolism and growth parameters in a large panel of Capsicum chinense accessions

Planta, 2015-09, Vol.242 (3), p.677-691

2015

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Proteomics – The key to understanding systems biology of Arabidopsis trichomes

Phytochemistry (Oxford), 2011-07, Vol.72 (10), p.1061-1070

2011

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Exploring natural variation of photosynthetic, primary metabolism and growth parameters in a large panel of Capsicumchinense accessions

Planta, 2015-05, Vol.242 (3), p.677-691

2015

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From systems biology to systems chemistry: metabolomic procedures enable insight into complex chemical reaction networks in water

RSC advances, 2014, Vol.4 (32), p.16777

2014

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A computational framework for evaluating the efficiency of Arabidopsis accessions in response to nitrogen stress reveals important metabolic mechanisms

Frontiers in plant science, 2012-01, Vol.3, p.217-217

2012

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The Sequence Reconstruction Problem

Discrete and Topological Models in Molecular Biology, 2014, p.23-43

2014

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Computational Approaches to Dissect and Understand Mechanisms of Adaptation

Molecular Mechanisms in Plant Adaptation, 2015, p.193-215

2015

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Integration of transcriptomics and metabolomics data specifies the metabolic response of Chlamydomonas to rapamycin treatment

Identification and Mode of Inheritance of Quantitative Trait Loci for Secondary Metabolite Abundance in Tomato

Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom

Metabolic variation between japonica and indica rice cultivars as revealed by non-targeted metabolomics

Aclonifen targets solanesyl diphosphate synthase, representing a novel mode of action for herbicides

Impact of the Carbon and Nitrogen Supply on Relationships and Connectivity between Metabolism and Biomass in a Broad Panel of Arabidopsis Accessions

Concurrent conditional clustering of multiple networks: COCONETS

A network property necessary for concentration robustness

Structured patterns in geographic variability of metabolic phenotypes in Arabidopsis thaliana

Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana

Dynamic regulatory on/off minimization for biological systems under internal temporal perturbations

Integration of metabolomics data into metabolic networks

iReMet-flux: constraint-based approach for integrating relative metabolite levels into a stoichiometric metabolic models

Impact of the Carbon and Nitrogen Supply on Relationships and Connectivity between Metabolism and Biomass in a Broad Panel of Arabidopsis Accessions1[W][OA]

Data Integration through Proximity-Based Networks Provides Biological Principles of Organization across Scales

Differential metabolic and coexpression networks of plant metabolism

Metabolic efficiency underpins performance trade-offs in growth of Arabidopsis thaliana

Model-based Confirmation of Alternative Substrates of Mitochondrial Electron Transport Chain

Exploring natural variation of photosynthetic, primary metabolism and growth parameters in a large panel of Capsicum chinense accessions

Proteomics – The key to understanding systems biology of Arabidopsis trichomes

Exploring natural variation of photosynthetic, primary metabolism and growth parameters in a large panel of Capsicumchinense accessions

From systems biology to systems chemistry: metabolomic procedures enable insight into complex chemical reaction networks in water

A computational framework for evaluating the efficiency of Arabidopsis accessions in response to nitrogen stress reveals important metabolic mechanisms

The Sequence Reconstruction Problem

Computational Approaches to Dissect and Understand Mechanisms of Adaptation

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