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Evolution of SARS-CoV-2-specific CD4+ T cell epitopes

Immunogenetics (New York), 2023-06, Vol.75 (3), p.283-293

2023

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Properties of MHC class I presented peptides that enhance immunogenicity

PLoS computational biology, 2013-10, Vol.9 (10), p.e1003266-e1003266

2013

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Immunogenetics special issue 2020: nomenclature, databases, and bioinformatics in immunogenetics

Immunogenetics (New York), 2020-02, Vol.72 (1-2), p.1-3

2020

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The evolution of natural killer cell receptors

Immunogenetics, 2016-01, Vol.68 (1), p.3-18

2016

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Tumor exome analysis reveals neoantigen-specific T-cell reactivity in an ipilimumab-responsive melanoma

Journal of clinical oncology, 2013-11, Vol.31 (32), p.e439-e442

2013

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Revealing factors determining immunodominant responses against dominant epitopes

Immunogenetics (New York), 2020-02, Vol.72 (1-2), p.109-118

2020

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The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage

Immunogenetics (New York), 2005-04, Vol.57 (1-2), p.33-41

2005

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Is the exquisite specificity of lymphocytes generated by thymic selection or due to evolution?

Frontiers in immunology, 2024, Vol.15, p.1266349-1266349

2024

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A Coevolutionary Arms Race between Hosts and Viruses Drives Polymorphism and Polygenicity of NK Cell Receptors

Molecular biology and evolution, 2015-08, Vol.32 (8), p.2149-2160

2015

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Quantifying the Impact of Human Leukocyte Antigen on the Human Gut Microbiota

mSphere, 2021-08, Vol.6 (4), p.e0047621-e0047621

2021

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Specificity of inhibitory KIRs enables NK cells to detect changes in an altered peptide environment

Immunogenetics (New York), 2018-02, Vol.70 (2), p.87-97

2018

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Modeling the adaptive immune system: predictions and simulations

Bioinformatics, 2007-12, Vol.23 (24), p.3265-3275

2007

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Zooming into the binding groove of HLA molecules: which positions and which substitutions change peptide binding most?

Immunogenetics (New York), 2015-08, Vol.67 (8), p.425-436

2015

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Amino acid similarity accounts for T cell cross-reactivity and for "holes" in the T cell repertoire

PloS one, 2008-03, Vol.3 (3), p.e1831-e1831

2008

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Virus encoded MHC-like decoys diversify the inhibitory KIR repertoire

PLoS computational biology, 2013-10, Vol.9 (10), p.e1003264-e1003264

2013

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Evolutionary and immunological implications of contemporary HIV-1 variation

British medical bulletin, 2001-09, Vol.58 (1), p.19-42

2001

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Predicted indirectly recognizable HLA epitopes presented by HLA-DR correlate with the de novo development of donor-specific HLA IgG antibodies after kidney transplantation

Human immunology, 2013-03, Vol.74 (3), p.290-296

2013

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Comprehensive Analysis of the Naturally Processed Peptide Repertoire: Differences between HLA-A and B in the Immunopeptidome

PloS one, 2015-09, Vol.10 (9), p.e0136417-e0136417

2015

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Role of T cells in severe COVID-19 disease, protection, and long term immunity

Immunogenetics (New York), 2023-06, Vol.75 (3), p.295-307

2023

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Long-term adaptation of the influenza A virus by escaping cytotoxic T-cell recognition

Scientific reports, 2016-09, Vol.6 (1), p.33334-33334, Article 33334

2016

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Editorial: Role of HLA and KIR in Viral Infections

Frontiers in immunology, 2016-07, Vol.7, p.286-286

2016

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Clustering Patterns of Cytotoxic T-Lymphocyte Epitopes in Human Immunodeficiency Virus Type 1 (HIV-1) Proteins Reveal Imprints of Immune Evasion on HIV-1 Global Variation

Journal of Virology, 2002-09, Vol.76 (17), p.8757-8768

2002

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CD8+ TCR Bias and Immunodominance in HIV-1 Infection

The Journal of immunology (1950), 2015-06, Vol.194 (11), p.5329-5345

2015

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Exploratory Study of Predicted Indirectly ReCognizable HLA Epitopes in Mismatched Hematopoietic Cell Transplantations

Frontiers in immunology, 2019-04, Vol.10, p.880-880

2019

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Role of peptide processing predictions in T cell epitope identification: contribution of different prediction programs

Immunogenetics (New York), 2015-02, Vol.67 (2), p.85-93

2015

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Evolution of SARS-CoV-2-specific CD4+ T cell epitopes

Properties of MHC class I presented peptides that enhance immunogenicity

Immunogenetics special issue 2020: nomenclature, databases, and bioinformatics in immunogenetics

The evolution of natural killer cell receptors

Tumor exome analysis reveals neoantigen-specific T-cell reactivity in an ipilimumab-responsive melanoma

Revealing factors determining immunodominant responses against dominant epitopes

The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage

Is the exquisite specificity of lymphocytes generated by thymic selection or due to evolution?

A Coevolutionary Arms Race between Hosts and Viruses Drives Polymorphism and Polygenicity of NK Cell Receptors

Quantifying the Impact of Human Leukocyte Antigen on the Human Gut Microbiota

Specificity of inhibitory KIRs enables NK cells to detect changes in an altered peptide environment

Modeling the adaptive immune system: predictions and simulations

Zooming into the binding groove of HLA molecules: which positions and which substitutions change peptide binding most?

Amino acid similarity accounts for T cell cross-reactivity and for "holes" in the T cell repertoire

Virus encoded MHC-like decoys diversify the inhibitory KIR repertoire

Evolutionary and immunological implications of contemporary HIV-1 variation

Predicted indirectly recognizable HLA epitopes presented by HLA-DR correlate with the de novo development of donor-specific HLA IgG antibodies after kidney transplantation

Comprehensive Analysis of the Naturally Processed Peptide Repertoire: Differences between HLA-A and B in the Immunopeptidome

Role of T cells in severe COVID-19 disease, protection, and long term immunity

Long-term adaptation of the influenza A virus by escaping cytotoxic T-cell recognition

Editorial: Role of HLA and KIR in Viral Infections

Clustering Patterns of Cytotoxic T-Lymphocyte Epitopes in Human Immunodeficiency Virus Type 1 (HIV-1) Proteins Reveal Imprints of Immune Evasion on HIV-1 Global Variation

CD8+ TCR Bias and Immunodominance in HIV-1 Infection

Exploratory Study of Predicted Indirectly ReCognizable HLA Epitopes in Mismatched Hematopoietic Cell Transplantations

Role of peptide processing predictions in T cell epitope identification: contribution of different prediction programs

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