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Microbiome evolution along divergent branches of the vertebrate tree of life: what is known and unknown

Molecular ecology, 2016-08, Vol.25 (16), p.3776-3800

2016

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Ranking the biases: The choice of OTUs vs. ASVs in 16S rRNA amplicon data analysis has stronger effects on diversity measures than rarefaction and OTU identity threshold

PloS one, 2022-02, Vol.17 (2), p.e0264443-e0264443

2022

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Early episodes of high-pressure core formation preserved in plume mantle

Nature (London), 2018-01, Vol.553 (7689), p.491-495

2018

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Rapid transition from primary to secondary crust building on the Moon explained by mantle overturn

Nature communications, 2023-08, Vol.14 (1), p.5002-5002, Article 5002

2023

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The gut microbiome of freshwater Unionidae mussels is determined by host species and is selectively retained from filtered seston

PloS one, 2019-11, Vol.14 (11), p.e0224796-e0224796

2019

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Phylogenetic Analysis of Bacterial Communities in Different Regions of the Gastrointestinal Tract of Agkistrodon piscivorus, the Cottonmouth Snake

PloS one, 2015-06, Vol.10 (6), p.e0128793-e0128793

2015

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Microbiomes of Caribbean Octocorals Vary Over Time but Are Resistant to Environmental Change

Frontiers in microbiology, 2020-06, Vol.11, p.1272-1272

2020

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Tracing the origin of the crayfish plague pathogen, Aphanomyces astaci, to the Southeastern United States

Scientific reports, 2021-04, Vol.11 (1), p.9332-9332, Article 9332

2021

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Patterns of variation in diversity of the Mississippi river microbiome over 1,300 kilometers

PloS one, 2017-03, Vol.12 (3), p.e0174890-e0174890

2017

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Effects of Life Stage, Site, and Species on the Dragonfly Gut Microbiome

Microorganisms (Basel), 2020-01, Vol.8 (2), p.183

2020

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Timescales of variation in diversity and production of bacterioplankton assemblages in the Lower Mississippi River

PloS one, 2020-04, Vol.15 (4), p.e0230945-e0230945

2020

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Environment and Co-occurring Native Mussel Species, but Not Host Genetics, Impact the Microbiome of a Freshwater Invasive Species ( Corbicula fluminea )

Frontiers in microbiology, 2022-04, Vol.13, p.800061-800061

2022

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Evaluating Methods of Preserving Aquatic Invertebrates for Microbiome Analysis

Microorganisms (Basel), 2022-04, Vol.10 (4), p.811

2022

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Gut Microbiomes of Freshwater Mussels (Unionidae) Are Taxonomically and Phylogenetically Variable across Years but Remain Functionally Stable

Microorganisms (Basel), 2021-02, Vol.9 (2), p.411

2021

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Gut microbiomes of sympatric Amazonian wood‐eating catfishes (Loricariidae) reflect host identity and little role in wood digestion

Ecology and evolution, 2020-07, Vol.10 (14), p.7117-7128

2020

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Characterizing the Gut Microbial Communities of Native and Invasive Freshwater Bivalves after Long-Term Sample Preservation

Microorganisms (Basel), 2023-10, Vol.11 (10), p.2489

2023

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The Saltpan Microbiome is Structured by Sediment Depth and Minimally Influenced by Variable Hydration

Microorganisms (Basel), 2020-04, Vol.8 (4), p.538

2020

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Influence of Particle Size on Bacterial Community Structure in Aquatic Sediments as Revealed by 16S rRNA Gene Sequence Analysis

Applied and Environmental Microbiology, 2008-08, Vol.74 (16), p.5237-5240

2008

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Emerging Perspectives on the Natural Microbiome of Fresh Produce Vegetables

Agriculture, 2015-06, Vol.5 (2), p.170-187

2015

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Microbial Composition of Freshwater Marsh Sediment Responds more Strongly to Microcosm Seawater Addition than Simulated Nitrate or Phosphate Eutrophication

Microbial ecology, 2023-08, Vol.86 (2), p.1060-1070

2023

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Seasonal Patterns Contribute More Towards Phyllosphere Bacterial Community Structure than Short-Term Perturbations

Microbial ecology, 2021-01, Vol.81 (1), p.146-156

2021

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Arsenite-Oxidizing Hydrogenobaculum Strain Isolated from an Acid-Sulfate-Chloride Geothermal Spring in Yellowstone National Park

Applied and Environmental Microbiology, 2004-03, Vol.70 (3), p.1865-1868

2004

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Rapid Oxidation of Arsenite in a Hot Spring Ecosystem, Yellowstone National Park

Environmental science & technology, 2001-08, Vol.35 (16), p.3302-3309

2001

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The gut bacterial microbiome of the Threeridge mussel, Amblema plicata, varies between rivers but shows a consistent core community

Freshwater biology, 2022-07, Vol.67 (7), p.1125-1136

2022

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Culture dependent and independent analysis of bacterial communities associated with commercial salad leaf vegetables

BMC microbiology, 2013-12, Vol.13 (1), p.274-274

2013

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Microbiome evolution along divergent branches of the vertebrate tree of life: what is known and unknown

Ranking the biases: The choice of OTUs vs. ASVs in 16S rRNA amplicon data analysis has stronger effects on diversity measures than rarefaction and OTU identity threshold

Early episodes of high-pressure core formation preserved in plume mantle

Rapid transition from primary to secondary crust building on the Moon explained by mantle overturn

The gut microbiome of freshwater Unionidae mussels is determined by host species and is selectively retained from filtered seston

Phylogenetic Analysis of Bacterial Communities in Different Regions of the Gastrointestinal Tract of Agkistrodon piscivorus, the Cottonmouth Snake

Microbiomes of Caribbean Octocorals Vary Over Time but Are Resistant to Environmental Change

Tracing the origin of the crayfish plague pathogen, Aphanomyces astaci, to the Southeastern United States

Patterns of variation in diversity of the Mississippi river microbiome over 1,300 kilometers

Effects of Life Stage, Site, and Species on the Dragonfly Gut Microbiome

Timescales of variation in diversity and production of bacterioplankton assemblages in the Lower Mississippi River

Environment and Co-occurring Native Mussel Species, but Not Host Genetics, Impact the Microbiome of a Freshwater Invasive Species ( Corbicula fluminea )

Evaluating Methods of Preserving Aquatic Invertebrates for Microbiome Analysis

Gut Microbiomes of Freshwater Mussels (Unionidae) Are Taxonomically and Phylogenetically Variable across Years but Remain Functionally Stable

Gut microbiomes of sympatric Amazonian wood‐eating catfishes (Loricariidae) reflect host identity and little role in wood digestion

Characterizing the Gut Microbial Communities of Native and Invasive Freshwater Bivalves after Long-Term Sample Preservation

The Saltpan Microbiome is Structured by Sediment Depth and Minimally Influenced by Variable Hydration

Influence of Particle Size on Bacterial Community Structure in Aquatic Sediments as Revealed by 16S rRNA Gene Sequence Analysis

Emerging Perspectives on the Natural Microbiome of Fresh Produce Vegetables

Microbial Composition of Freshwater Marsh Sediment Responds more Strongly to Microcosm Seawater Addition than Simulated Nitrate or Phosphate Eutrophication

Seasonal Patterns Contribute More Towards Phyllosphere Bacterial Community Structure than Short-Term Perturbations

Arsenite-Oxidizing Hydrogenobaculum Strain Isolated from an Acid-Sulfate-Chloride Geothermal Spring in Yellowstone National Park

Rapid Oxidation of Arsenite in a Hot Spring Ecosystem, Yellowstone National Park

The gut bacterial microbiome of the Threeridge mussel, Amblema plicata, varies between rivers but shows a consistent core community

Culture dependent and independent analysis of bacterial communities associated with commercial salad leaf vegetables

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