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BioSilico: an integrated metabolic database system

Bioinformatics, 2004-11, Vol.20 (17), p.3270-3272

2004

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Identifying disease sensitive and quantitative trait-relevant biomarkers from multidimensional heterogeneous imaging genetics data via sparse multimodal multitask learning

Bioinformatics (Oxford, England), 2012-06, Vol.28 (12), p.i127-i136

2012

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Relational patterns of gene expression via non-metric multidimensional scaling analysis

Bioinformatics, 2005-03, Vol.21 (6), p.730-740

2005

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Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology

Bioinformatics, 2010-10, Vol.26 (19), p.2455-2457

2010

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IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

Bioinformatics (Oxford, England), 2012-06, Vol.28 (11), p.1420-1428

2012

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PilZ domain is part of the bacterial c-di-GMP binding protein

Bioinformatics, 2006-01, Vol.22 (1), p.3-6

2006

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Combenefit: an interactive platform for the analysis and visualization of drug combinations

Bioinformatics (Oxford, England), 2016-09, Vol.32 (18), p.2866-2868

2016

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GNU MCSim: Bayesian statistical inference for SBML-coded systems biology models

Bioinformatics, 2009-06, Vol.25 (11), p.1453-1454

Bois, Frédéric Y

2009

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E-Cell 2: Multi-platform E-Cell simulation system

Bioinformatics, 2003-09, Vol.19 (13), p.1727-1729

2003

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Meta-IDBA: a de Novo assembler for metagenomic data

Bioinformatics, 2011-07, Vol.27 (13), p.i94-i101

2011

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Accurate, scalable cohort variant calls using DeepVariant and GLnexus

Bioinformatics, 2021-04, Vol.36 (24), p.5582-5589

2021

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GenomeDISCO: a concordance score for chromosome conformation capture experiments using random walks on contact map graphs

Bioinformatics, 2018-08, Vol.34 (16), p.2701-2707

2018

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A stochastic differential equation model for quantifying transcriptional regulatory network in Saccharomyces cerevisiae

Bioinformatics, 2005-06, Vol.21 (12), p.2883-2890

2005

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chromPlot: visualization of genomic data in chromosomal context

Bioinformatics (Oxford, England), 2016-08, Vol.32 (15), p.2366-2368

2016

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A robust and accurate binning algorithm for metagenomic sequences with arbitrary species abundance ratio

Bioinformatics, 2011-06, Vol.27 (11), p.1489-1495

2011

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iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures

Bioinformatics, 2020-01, Vol.36 (1), p.131-135

2020

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Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results

Bioinformatics (Oxford, England), 2015-11, Vol.31 (22), p.3666-3672

2015

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Detection of orthologous exons and isoforms using EGIO

Bioinformatics (Oxford, England), 2022-09, Vol.38 (19), p.4474-4480

2022

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A robust model for read count data in exome sequencing experiments and implications for copy number variant calling

Bioinformatics, 2012-11, Vol.28 (21), p.2747-2754

2012

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Principal component analysis for clustering gene expression data

Bioinformatics, 2001-09, Vol.17 (9), p.763-774

2001

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MSProGene: integrative proteogenomics beyond six-frames and single nucleotide polymorphisms

Bioinformatics (Oxford, England), 2015-06, Vol.31 (12), p.i106-i115

2015

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Exploring the structure and function of temporal networks with dynamic graphlets

Bioinformatics (Oxford, England), 2015-06, Vol.31 (12), p.i171-i180

2015

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METACLUSTER-an R package for context-specific expression analysis of metabolic gene clusters

Bioinformatics (Oxford, England), 2019-09, Vol.35 (17), p.3178-3180

2019

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An efficient Monte Carlo approach to assessing statistical significance in genomic studies

Bioinformatics, 2005-03, Vol.21 (6), p.781-787

LIN, D. Y

2005

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BioSilico: an integrated metabolic database system

Identifying disease sensitive and quantitative trait-relevant biomarkers from multidimensional heterogeneous imaging genetics data via sparse multimodal multitask learning

Relational patterns of gene expression via non-metric multidimensional scaling analysis

Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

PilZ domain is part of the bacterial c-di-GMP binding protein

Combenefit: an interactive platform for the analysis and visualization of drug combinations

GNU MCSim: Bayesian statistical inference for SBML-coded systems biology models

E-Cell 2: Multi-platform E-Cell simulation system

Meta-IDBA: a de Novo assembler for metagenomic data

Accurate, scalable cohort variant calls using DeepVariant and GLnexus

GenomeDISCO: a concordance score for chromosome conformation capture experiments using random walks on contact map graphs

A stochastic differential equation model for quantifying transcriptional regulatory network in Saccharomyces cerevisiae

chromPlot: visualization of genomic data in chromosomal context

A robust and accurate binning algorithm for metagenomic sequences with arbitrary species abundance ratio

iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures

Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results

Detection of orthologous exons and isoforms using EGIO

A robust model for read count data in exome sequencing experiments and implications for copy number variant calling

Principal component analysis for clustering gene expression data

MSProGene: integrative proteogenomics beyond six-frames and single nucleotide polymorphisms

Exploring the structure and function of temporal networks with dynamic graphlets

Structured crowdsourcing enables convolutional segmentation of histology images

METACLUSTER-an R package for context-specific expression analysis of metabolic gene clusters

An efficient Monte Carlo approach to assessing statistical significance in genomic studies

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