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Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology

Bioinformatics, 2010-10, Vol.26 (19), p.2455-2457

2010

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A Random Effects Branch-Site Model for Detecting Episodic Diversifying Selection

Molecular biology and evolution, 2011-11, Vol.28 (11), p.3033-3043

2011

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Long-branch attraction bias and inconsistency in Bayesian phylogenetics

PloS one, 2009-12, Vol.4 (12), p.e7891-e7891

2009

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Genetically depauperate in the continent but rich in oceanic islands: Cistus monspeliensis (Cistaceae) in the Canary Islands

PloS one, 2011-02, Vol.6 (2), p.e17172-e17172

2011

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9-genes reinforce the phylogeny of holometabola and yield alternate views on the phylogenetic placement of Strepsiptera

PloS one, 2010-07, Vol.5 (7), p.e11887-e11887

2010

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Detection of Minority Resistance during Early HIV-1 Infection: Natural Variation and Spurious Detection rather than Transmission and Evolution of Multiple Viral Variants

Journal of Virology, 2011-08, Vol.85 (16), p.8359-8367

2011

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Ecological Speciation in South Atlantic Island Finches

Science (American Association for the Advancement of Science), 2007-03, Vol.315 (5817), p.1420-1423

2007

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Frequent toggling between alternative amino acids is driven by selection in HIV-1

PLoS pathogens, 2008-12, Vol.4 (12), p.e1000242-e1000242

2008

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Correcting the bias of empirical frequency parameter estimators in codon models

PloS one, 2010-07, Vol.5 (7), p.e11230-e11230

2010

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CodonTest: modeling amino acid substitution preferences in coding sequences

PLoS computational biology, 2010-08, Vol.6 (8), p.e1000885

2010

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The origins of sexually transmitted HIV among men who have sex with men

Science translational medicine, 2010-02, Vol.2 (18), p.18re1

2010

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A scalable method for analysis and display of DNA sequences

PloS one, 2009-10, Vol.4 (10), p.e7051-e7051

2009

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Evolutionary distances in the twilight zone--a rational kernel approach

PloS one, 2010-12, Vol.5 (12), p.e15788-e15788

2010

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Investigating the Origin and Spread of Hepatitis C Virus Genotype 5a

Journal of Virology, 2006-05, Vol.80 (9), p.4220-4226

2006

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Using phylogeography to characterize the origins of the HIV-1 subtype F epidemic in Romania

Infection, genetics and evolution, 2011-07, Vol.11 (5), p.975-979

2011

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Evolutionary constraints acting on DDX3X protein potentially interferes with Rev-mediated nuclear export of HIV-1 RNA

PloS one, 2010-03, Vol.5 (3), p.e9613-e9613

2010

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Benchmarking multi-rate codon models

PloS one, 2010-07, Vol.5 (7), p.e11587-e11587

2010

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Covariation of branch lengths in phylogenies of functionally related genes

PloS one, 2009-12, Vol.4 (12), p.e8487-e8487

2009

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Experimental evidence indicating that mastreviruses probably did not co-diverge with their hosts

Virology journal, 2009-07, Vol.6 (1), p.104-104, Article 104

2009

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Incidence of Helicobacter felis and the Effect of Coinfection with Helicobacter pylori on the Gastric Mucosa in the African Population

Journal of Clinical Microbiology, 2006-05, Vol.44 (5), p.1692-1696

2006

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The transmission of Helicobacter pylori : The effects of analysis method and study population on inference

Baillière's best practice & research. Clinical gastroenterology, 2007-01, Vol.21 (2), p.215-236

2007

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Vocal identification of individual African Wood Owls Strix woodfordii: a technique to monitor long-term adult turnover and residency

Ibis (London, England), 2002-01, Vol.144 (1), p.30-39

2002

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Genome-wide analysis of the structure of the South African Coloured Population in the Western Cape

Human genetics, 2010-08, Vol.128 (2), p.145-153

2010

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Characterization and evolution of the mitochondrial DNA control region in hornbills (Bucerotiformes)

Journal of molecular evolution, 2002-06, Vol.54 (6), p.794-806

2002

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Models of coding sequence evolution

Briefings in bioinformatics, 2009-01, Vol.10 (1), p.97-109

2009

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Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology

A Random Effects Branch-Site Model for Detecting Episodic Diversifying Selection

Long-branch attraction bias and inconsistency in Bayesian phylogenetics

Genetically depauperate in the continent but rich in oceanic islands: Cistus monspeliensis (Cistaceae) in the Canary Islands

9-genes reinforce the phylogeny of holometabola and yield alternate views on the phylogenetic placement of Strepsiptera

Detection of Minority Resistance during Early HIV-1 Infection: Natural Variation and Spurious Detection rather than Transmission and Evolution of Multiple Viral Variants

Ecological Speciation in South Atlantic Island Finches

Frequent toggling between alternative amino acids is driven by selection in HIV-1

Correcting the bias of empirical frequency parameter estimators in codon models

CodonTest: modeling amino acid substitution preferences in coding sequences

The origins of sexually transmitted HIV among men who have sex with men

A scalable method for analysis and display of DNA sequences

Evolutionary distances in the twilight zone--a rational kernel approach

Investigating the Origin and Spread of Hepatitis C Virus Genotype 5a

Using phylogeography to characterize the origins of the HIV-1 subtype F epidemic in Romania

Evolutionary constraints acting on DDX3X protein potentially interferes with Rev-mediated nuclear export of HIV-1 RNA

Benchmarking multi-rate codon models

Covariation of branch lengths in phylogenies of functionally related genes

Experimental evidence indicating that mastreviruses probably did not co-diverge with their hosts

Incidence of Helicobacter felis and the Effect of Coinfection with Helicobacter pylori on the Gastric Mucosa in the African Population

The transmission of Helicobacter pylori : The effects of analysis method and study population on inference

Vocal identification of individual African Wood Owls Strix woodfordii: a technique to monitor long-term adult turnover and residency

Genome-wide analysis of the structure of the South African Coloured Population in the Western Cape

Characterization and evolution of the mitochondrial DNA control region in hornbills (Bucerotiformes)

Models of coding sequence evolution

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