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The Short Chain Fatty Acid Butyrate Imprints an Antimicrobial Program in Macrophages

Immunity (Cambridge, Mass.), 2019-02, Vol.50 (2), p.432-445.e7

2019

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Tuning the Transcriptional Response to Hypoxia by Inhibiting Hypoxia-inducible Factor (HIF) Prolyl and Asparaginyl Hydroxylases

The Journal of biological chemistry, 2016-09, Vol.291 (39), p.20661-20673

2016

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Alpha kinase 1 controls intestinal inflammation by suppressing the IL-12/Th1 axis

Nature communications, 2018-09, Vol.9 (1), p.3797-13, Article 3797

2018

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Sequencing depth and coverage: key considerations in genomic analyses

Nature reviews. Genetics, 2014-02, Vol.15 (2), p.121

2014

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Pharmacologically induced weight loss is associated with distinct gut microbiome changes in obese rats

BMC microbiology, 2022-04, Vol.22 (1), p.91-91, Article 91

2022

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Alterations in the gut microbiome implicate key taxa and metabolic pathways across inflammatory arthritis phenotypes

Science translational medicine, 2023-07, Vol.15 (706), p.eabn4722

2023

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CGAT: computational genomics analysis toolkit

Bioinformatics, 2014-05, Vol.30 (9), p.1290-1291

2014

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Genetic and environmental factors shape the host response to Helicobacter hepaticus: insights into IBD pathogenesis

Current opinion in microbiology, 2022-02, Vol.65, p.145-155

2022

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Accurate identification and quantification of commensal microbiota bound by host immunoglobulins

Microbiome, 2021-01, Vol.9 (1), p.33-33, Article 33

2021

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Predicting long non-coding RNAs using RNA sequencing

Methods (San Diego, Calif.), 2013-09, Vol.63 (1), p.50-59

2013

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Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes

Nature communications, 2014-06, Vol.5 (1), p.3979, Article 3979

2014

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Tissue-dependent transcriptional and bacterial associations in primary sclerosing cholangitis-associated inflammatory bowel disease

Wellcome open research, 2021-01, Vol.6, p.199-199

2021

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Long-term effects of gestational nicotine exposure and food-restriction on gene expression in the striatum of adolescent rats

PloS one, 2014-02, Vol.9 (2), p.e88896

2014

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Foxp3 + T reg cells control psoriasiform inflammation by restraining an IFN-I-driven CD8 + T cell response

The Journal of experimental medicine, 2018-08, Vol.215 (8), p.1987-1998

2018

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Genetic influences on attention deficit hyperactivity disorder symptoms from age 2 to 3: a quantitative and molecular genetic investigation

BMC psychiatry, 2010-12, Vol.10 (1), p.102-102, Article 102

2010

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CGAT-core: a python framework for building scalable, reproducible computational biology workflows [version 2; peer review: 1 approved, 1 approved with reservations]

F1000 research, 2019, Vol.8, p.377

2019

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Corrigendum: Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes

Nature communications, 2015-04, Vol.6, p.6814-6814

2015

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CGAT-core: a python framework for building scalable, reproducible computational biology workflows [version 1; peer review: 1 approved, 1 approved with reservations]

F1000 research, 2019, Vol.8, p.377

2019

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Streamlined processing and analysis of 16S rRNA amplicon sequencing data with OCMS_16S and OCMSlooksy

Wellcome open research, 2022, Vol.7, p.68

2022

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Recent advances and future directions in microbiome metabolomics

Current opinion in endocrine and metabolic research, 2021-10, Vol.20, p.100283, Article 100283

2021

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Tissue-dependent transcriptional and bacterial associations in primary sclerosing cholangitis-associated inflammatory bowel disease

Wellcome open research, 2021, Vol.6, p.199

2021

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Correction: Corrigendum: Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes

Nature communications, 2015-04, Vol.6 (1), Article 6814

2015

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Long-Term Effects of Gestational Nicotine Exposure and Food-Restriction on Gene Expression in the Striatum of Adolescent Rats: e88896

PloS one, 2014-02, Vol.9 (2)

2014

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Prenatal Exposure to Nicotine Impairs Performance of the 5-Choice Serial Reaction Time Task in Adult Rats

Neuropsychopharmacology, 2011-04, Vol.36 (5), p.1114-1125

2011

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MHC class II antigen presentation by intestinal epithelial cells fine-tunes bacteria-reactive CD4 T-cell responses

Mucosal immunology, 2023-05

2023

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The Short Chain Fatty Acid Butyrate Imprints an Antimicrobial Program in Macrophages

Tuning the Transcriptional Response to Hypoxia by Inhibiting Hypoxia-inducible Factor (HIF) Prolyl and Asparaginyl Hydroxylases

Alpha kinase 1 controls intestinal inflammation by suppressing the IL-12/Th1 axis

Sequencing depth and coverage: key considerations in genomic analyses

Pharmacologically induced weight loss is associated with distinct gut microbiome changes in obese rats

Alterations in the gut microbiome implicate key taxa and metabolic pathways across inflammatory arthritis phenotypes

CGAT: computational genomics analysis toolkit

Genetic and environmental factors shape the host response to Helicobacter hepaticus: insights into IBD pathogenesis

Accurate identification and quantification of commensal microbiota bound by host immunoglobulins

Predicting long non-coding RNAs using RNA sequencing

Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes

Tissue-dependent transcriptional and bacterial associations in primary sclerosing cholangitis-associated inflammatory bowel disease

Long-term effects of gestational nicotine exposure and food-restriction on gene expression in the striatum of adolescent rats

Foxp3 + T reg cells control psoriasiform inflammation by restraining an IFN-I-driven CD8 + T cell response

Genetic influences on attention deficit hyperactivity disorder symptoms from age 2 to 3: a quantitative and molecular genetic investigation

CGAT-core: a python framework for building scalable, reproducible computational biology workflows [version 2; peer review: 1 approved, 1 approved with reservations]

Corrigendum: Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes

CGAT-core: a python framework for building scalable, reproducible computational biology workflows [version 1; peer review: 1 approved, 1 approved with reservations]

Streamlined processing and analysis of 16S rRNA amplicon sequencing data with OCMS_16S and OCMSlooksy

Recent advances and future directions in microbiome metabolomics

Tissue-dependent transcriptional and bacterial associations in primary sclerosing cholangitis-associated inflammatory bowel disease

Correction: Corrigendum: Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes

Long-Term Effects of Gestational Nicotine Exposure and Food-Restriction on Gene Expression in the Striatum of Adolescent Rats: e88896

Prenatal Exposure to Nicotine Impairs Performance of the 5-Choice Serial Reaction Time Task in Adult Rats

MHC class II antigen presentation by intestinal epithelial cells fine-tunes bacteria-reactive CD4 T-cell responses

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