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Deep evolutionary analysis reveals the design principles of fold A glycosyltransferases

eLife, 2020-04, Vol.9

2020

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KinOrtho: a method for mapping human kinase orthologs across the tree of life and illuminating understudied kinases

BMC bioinformatics, 2021-09, Vol.22 (1), p.1-446, Article 446

2021

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Quantitative Structure-Mutation-Activity Relationship Tests (QSMART) model for protein kinase inhibitor response prediction

BMC bioinformatics, 2020-11, Vol.21 (1), p.520-22, Article 520

2020

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Predicting adverse side effects of drugs

BMC genomics, 2011-12, Vol.12 Suppl 5 (Suppl 5), p.S11-S11, Article S11

2011

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Predicting adverse drug reaction profiles by integrating protein interaction networks with drug structures

Proteomics (Weinheim), 2013-01, Vol.13 (2), p.313-324

2013

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Dark kinase annotation, mining, and visualization using the Protein Kinase Ontology

PeerJ (San Francisco, CA), 2023-12, Vol.11, p.e16087-e16087, Article e16087

2023

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Predicting protein and pathway associations for understudied dark kinases using pattern-constrained knowledge graph embedding

PeerJ (San Francisco, CA), 2023-10, Vol.11, p.e15815-e15815, Article e15815

2023

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Mutations in protein kinase Cγ promote spinocerebellar ataxia type 14 by impairing kinase autoinhibition

Science signaling, 2022-09, Vol.15 (753), p.eabk1147

2022

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Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources

Scientific reports, 2018-04, Vol.8 (1), p.6518-16, Article 6518

2018

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Classification of Cancer Primary Sites Using Machine Learning and Somatic Mutations

BioMed research international, 2015-01, Vol.2015, p.491502-9

2015

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Network-Assisted Prediction of Potential Drugs for Addiction

BioMed research international, 2014-01, Vol.2014, p.258784-9

2014

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AutoCriteria: a generalizable clinical trial eligibility criteria extraction system powered by large language models

Journal of the American Medical Informatics Association : JAMIA, 2024-01, Vol.31 (2), p.375-385

2024

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PDBe-KB: a community-driven resource for structural and functional annotations

Nucleic acids research, 2020-01, Vol.48 (D1), p.D344

PDBe-KB consortium

2020

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Extracting genetic alteration information for personalized cancer therapy from ClinicalTrials.gov

Journal of the American Medical Informatics Association : JAMIA, 2016-07, Vol.23 (4), p.750-757

2016

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A weighted and integrated drug-target interactome: drug repurposing for schizophrenia as a use case

BMC systems biology, 2015-06, Vol.9 Suppl 4 (S4), p.S2-S2, Article S2

2015

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Acupuncture stimulation of ST36 (Zusanli) attenuates acute renal but not hepatic injury in lipopolysaccharide-stimulated rats

Anesthesia and analgesia, 2007-03, Vol.104 (3), p.646-654

2007

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An NMR study of acid sites on sulfated-zirconia catalysts using trimethylphosphine as a probe

Catalysis letters, 1994-01, Vol.27 (3-4), p.305-314

1994

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A Network Biology Approach to Predicting Drug Cardiotoxicity

2011 IEEE International Conference on Bioinformatics and Biomedicine, 2011, p.278-281

2011

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Ensemble pretrained language models to extract biomedical knowledge from literature

Journal of the American Medical Informatics Association : JAMIA, 2024-03

2024

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Pre-treatment of acupuncture stimulation of ST36 (Zusanli) significantly attenuates CAT-2, CAT-2B and GTPCH transcription in septic rat lungs

Acta anaesthesiologica Taiwanica, 2006-06, Vol.44 (2), p.83

2006

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Predicting adverse drug reaction profiles by integrating protein interaction networks with drug structures : BIOINFORMATICS IN PROTEOMICS

Proteomics (Weinheim), 2013, Vol.13 (2), p.313-324

2013

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Predicting adverse side effects of drugs

BMC genomics, 2011-12, Vol.12 (Suppl 5), p.S11-S11

2011

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Extracting Drug-Protein Relation from Literature Using Ensembles of Biomedical Transformers

Studies in health technology and informatics, 2024-01, Vol.310, p.639

2024

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Lattice-Partition-Based Downlink Non-Orthogonal Multiple Access Without SIC for Slow Fading Channels

IEEE transactions on communications, 2019-02, Vol.67 (2), p.1166-1181

2019

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Biomarker Distributions as Maturity Indicators in Coals, Coaly Shales, and Shales from Taiwan

TAO : Terrestrial, atmospheric, and oceanic sciences, 2007-10, Vol.18 (4), p.739

2007

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Deep evolutionary analysis reveals the design principles of fold A glycosyltransferases

KinOrtho: a method for mapping human kinase orthologs across the tree of life and illuminating understudied kinases

Quantitative Structure-Mutation-Activity Relationship Tests (QSMART) model for protein kinase inhibitor response prediction

Predicting adverse side effects of drugs

Predicting adverse drug reaction profiles by integrating protein interaction networks with drug structures

Dark kinase annotation, mining, and visualization using the Protein Kinase Ontology

Predicting protein and pathway associations for understudied dark kinases using pattern-constrained knowledge graph embedding

Mutations in protein kinase Cγ promote spinocerebellar ataxia type 14 by impairing kinase autoinhibition

Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources

Classification of Cancer Primary Sites Using Machine Learning and Somatic Mutations

Network-Assisted Prediction of Potential Drugs for Addiction

AutoCriteria: a generalizable clinical trial eligibility criteria extraction system powered by large language models

PDBe-KB: a community-driven resource for structural and functional annotations

Extracting genetic alteration information for personalized cancer therapy from ClinicalTrials.gov

A weighted and integrated drug-target interactome: drug repurposing for schizophrenia as a use case

Acupuncture stimulation of ST36 (Zusanli) attenuates acute renal but not hepatic injury in lipopolysaccharide-stimulated rats

An NMR study of acid sites on sulfated-zirconia catalysts using trimethylphosphine as a probe

A Network Biology Approach to Predicting Drug Cardiotoxicity

Ensemble pretrained language models to extract biomedical knowledge from literature

Pre-treatment of acupuncture stimulation of ST36 (Zusanli) significantly attenuates CAT-2, CAT-2B and GTPCH transcription in septic rat lungs

Predicting adverse drug reaction profiles by integrating protein interaction networks with drug structures : BIOINFORMATICS IN PROTEOMICS

Predicting adverse side effects of drugs

Extracting Drug-Protein Relation from Literature Using Ensembles of Biomedical Transformers

Lattice-Partition-Based Downlink Non-Orthogonal Multiple Access Without SIC for Slow Fading Channels

Biomarker Distributions as Maturity Indicators in Coals, Coaly Shales, and Shales from Taiwan

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