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SNPGenie: estimating evolutionary parameters to detect natural selection using pooled next-generation sequencing data

Bioinformatics (Oxford, England), 2015-11, Vol.31 (22), p.3709-3711

2015

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Within-host nucleotide diversity of virus populations: insights from next-generation sequencing

Infection, genetics and evolution, 2015-03, Vol.30, p.1-7

2015

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Selective Bottlenecks Shape Evolutionary Pathways Taken during Mammalian Adaptation of a 1918-like Avian Influenza Virus

Cell host & microbe, 2016-02, Vol.19 (2), p.169-180

2016

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Selection Maintains Low Genomic GC Content in Marine SAR11 Lineages

Molecular biology and evolution, 2015-10, Vol.32 (10), p.2738-2748

2015

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Evolution of divergent life history strategies in marine alphaproteobacteria

mBio, 2013-07, Vol.4 (4)

2013

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Low level of sequence diversity at merozoite surface protein-1 locus of Plasmodium ovale curtisi and P. ovale wallikeri from Thai isolates

PloS one, 2013-03, Vol.8 (3), p.e58962-e58962

2013

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Gene Duplication and the Origin of Novel Proteins

Proceedings of the National Academy of Sciences - PNAS, 2005-06, Vol.102 (25), p.8791-8792

Hughes, Austin L.

2005

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A Novel Hepacivirus with an Unusually Long and Intrinsically Disordered NS5A Protein in a Wild Old World Primate

Journal of Virology, 2013-08, Vol.87 (16), p.8971-8981

2013

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Selection on haemagglutinin imposes a bottleneck during mammalian transmission of reassortant H5N1 influenza viruses

Nature communications, 2013-10, Vol.4 (1), p.2636-2636, Article 2636

2013

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High genetic diversity and adaptive potential of two simian hemorrhagic fever viruses in a wild primate population

PloS one, 2014-03, Vol.9 (3), p.e90714-e90714

2014

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Origin and diversification of the L-amino oxidase family in innate immune defenses of animals

Immunogenetics (New York), 2010-12, Vol.62 (11-12), p.753-759

Hughes, Austin L

2010

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origin of adaptive phenotypes

Proceedings of the National Academy of Sciences - PNAS, 2008-09, Vol.105 (36), p.13193-13194

Hughes, Austin L

2008

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A genome-wide screen identifies a single beta-defensin gene cluster in the chicken: implications for the origin and evolution of mammalian defensins

BMC genomics, 2004-08, Vol.5 (1), p.56-56, Article 56

2004

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Small effective population sizes and rare nonsynonymous variants in potyviruses

Virology (New York, N.Y.), 2009-10, Vol.393 (1), p.127-134

Hughes, Austin L

2009

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Pregnancy without progesterone in horses defines a second endogenous biopotent progesterone receptor agonist, 5α-dihydroprogesterone

Proceedings of the National Academy of Sciences - PNAS, 2014-03, Vol.111 (9), p.3365-3370

2014

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Evolutionary diversification of the vertebrate transferrin multi-gene family

Immunogenetics (New York), 2014-11, Vol.66 (11), p.651-661

2014

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NATURAL SELECTION AT MAJOR HISTOCOMPATIBILITY COMPLEX LOCI OF VERTEBRATES

Annual review of genetics, 1998-01, Vol.32 (1), p.415-435

1998

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Evolutionary diversification of the avian fatty acid-binding proteins

Gene, 2011-12, Vol.490 (1), p.1-5

2011

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Evidence for Abundant Slightly Deleterious Polymorphisms in Bacterial Populations

Genetics (Austin), 2005-02, Vol.169 (2), p.533-538

Hughes, Austin L

2005

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Evolutionary conservation of amino acid composition in paralogous insect vitellogenins

Gene, 2010-11, Vol.467 (1), p.35-40

Hughes, Austin L.

2010

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Functional diversification of the toll-like receptor gene family

Immunogenetics (New York), 2008-05, Vol.60 (5), p.249-256

2008

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Ecology of malaria parasites infecting Southeast Asian macaques: evidence from cytochrome b sequences

Molecular ecology, 2010-08, Vol.19 (16), p.3466-3476

2010

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Evolution of bill size in relation to body size in toucans and hornbills (Aves: Piciformes and Bucerotiformes)

Zoologia (Curitiba, Brazil), 2014-06, Vol.31 (3), p.256-263

Hughes, Austin L

2014

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Codon-based tests of positive selection, branch lengths, and the evolution of mammalian immune system genes

Immunogenetics (New York), 2008-09, Vol.60 (9), p.495-506

2008

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Conditional Immune Escape during Chronic Simian Immunodeficiency Virus Infection

Journal of virology, 2016-01, Vol.90 (1), p.545-552

2016

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SNPGenie: estimating evolutionary parameters to detect natural selection using pooled next-generation sequencing data

Within-host nucleotide diversity of virus populations: insights from next-generation sequencing

Selective Bottlenecks Shape Evolutionary Pathways Taken during Mammalian Adaptation of a 1918-like Avian Influenza Virus

Selection Maintains Low Genomic GC Content in Marine SAR11 Lineages

Evolution of divergent life history strategies in marine alphaproteobacteria

Low level of sequence diversity at merozoite surface protein-1 locus of Plasmodium ovale curtisi and P. ovale wallikeri from Thai isolates

Gene Duplication and the Origin of Novel Proteins

A Novel Hepacivirus with an Unusually Long and Intrinsically Disordered NS5A Protein in a Wild Old World Primate

Selection on haemagglutinin imposes a bottleneck during mammalian transmission of reassortant H5N1 influenza viruses

High genetic diversity and adaptive potential of two simian hemorrhagic fever viruses in a wild primate population

Origin and diversification of the L-amino oxidase family in innate immune defenses of animals

origin of adaptive phenotypes

A genome-wide screen identifies a single beta-defensin gene cluster in the chicken: implications for the origin and evolution of mammalian defensins

Small effective population sizes and rare nonsynonymous variants in potyviruses

Pregnancy without progesterone in horses defines a second endogenous biopotent progesterone receptor agonist, 5α-dihydroprogesterone

Evolutionary diversification of the vertebrate transferrin multi-gene family

NATURAL SELECTION AT MAJOR HISTOCOMPATIBILITY COMPLEX LOCI OF VERTEBRATES

Evolutionary diversification of the avian fatty acid-binding proteins

Evidence for Abundant Slightly Deleterious Polymorphisms in Bacterial Populations

Evolutionary conservation of amino acid composition in paralogous insect vitellogenins

Functional diversification of the toll-like receptor gene family

Ecology of malaria parasites infecting Southeast Asian macaques: evidence from cytochrome b sequences

Evolution of bill size in relation to body size in toucans and hornbills (Aves: Piciformes and Bucerotiformes)

Codon-based tests of positive selection, branch lengths, and the evolution of mammalian immune system genes

Conditional Immune Escape during Chronic Simian Immunodeficiency Virus Infection

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