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APAtrap: identification and quantification of alternative polyadenylation sites from RNA-seq data

Bioinformatics, 2018-06, Vol.34 (11), p.1841-1849

2018

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Single-nucleus gene and gene set expression-based similarity network fusion identifies autism molecular subtypes

BMC bioinformatics, 2023-04, Vol.24 (1), p.142-142, Article 142

2023

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Expectation-Maximization Approach to Fault Diagnosis With Missing Data

IEEE transactions on industrial electronics (1982), 2015-02, Vol.62 (2), p.1231-1240

2015

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Commonality in dysregulated expression of gene sets in cortical brains of individuals with autism, schizophrenia, and bipolar disorder

Translational psychiatry, 2019-05, Vol.9 (1), p.152-152, Article 152

2019

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Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation

Proceedings of the National Academy of Sciences - PNAS, 2011-07, Vol.108 (30), p.12533-12538

2011

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A Denoising Method for Seismic Data Based on SVD and Deep Learning

Applied sciences, 2022-12, Vol.12 (24), p.12840

2022

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SRGS: sparse partial least squares-based recursive gene selection for gene regulatory network inference

BMC genomics, 2022-11, Vol.23 (1), p.782-782, Article 782

2022

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Determinants of public T cell responses

Cell research, 2012-01, Vol.22 (1), p.33-42

2012

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Feature selection for high-dimensional multi-category data using PLS-based local recursive feature elimination

Expert systems with applications, 2014-03, Vol.41 (4), p.1463-1475

2014

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An analytical method for the identification of cell type-specific disease gene modules

Journal of translational medicine, 2021-01, Vol.19 (1), p.20-20, Article 20

2021

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Shared and Cell-Type-Specific Gene Expression Patterns Associated With Autism Revealed by Integrative Regularized Non-Negative Matrix Factorization

Frontiers in genetics, 2022-05, Vol.13, p.865371-865371

2022

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Cell Type-Specific Gene Network-Based Analysis Depicts the Heterogeneity of Autism Spectrum Disorder

Frontiers in cellular neuroscience, 2020-03, Vol.14, p.59-59

2020

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detectIR: a novel program for detecting perfect and imperfect inverted repeats using complex numbers and vector calculation

PloS one, 2014-11, Vol.9 (11), p.e113349-e113349

2014

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scAPAmod: Profiling Alternative Polyadenylation Modalities in Single Cells from Single-Cell RNA-Seq Data

International journal of molecular sciences, 2022-07, Vol.23 (15), p.8123

2022

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The cell-free DNA methylome captures distinctions between localized and metastatic prostate tumors

Nature communications, 2022-10, Vol.13 (1), p.6467-14, Article 6467

2022

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A novel feature selection method to predict protein structural class

Computational biology and chemistry, 2018-10, Vol.76, p.118-129

2018

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stAPAminer: Mining Spatial Patterns of Alternative Polyadenylation for Spatially Resolved Transcriptomic Studies

Genomics, proteomics & bioinformatics, 2023-06, Vol.21 (3), p.601-618

2023

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Cell Type-Specific Predictive Models Perform Prioritization of Genes and Gene Sets Associated With Autism

Frontiers in genetics, 2021-01, Vol.11, p.628539-628539

2021

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Genome-Wide Comparative Analyses of Polyadenylation Signals in Eukaryotes Suggest a Possible Origin of the AAUAAA Signal

International journal of molecular sciences, 2019-02, Vol.20 (4), p.958

2019

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Laser-Induced Breakdown Spectroscopy for Rapid Discrimination of Heavy-Metal-Contaminated Seafood Tegillarca granosa

Sensors (Basel, Switzerland), 2017-11, Vol.17 (11), p.2655

2017

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Genome level analysis of rice mRNA 3'-end processing signals and alternative polyadenylation

Nucleic acids research, 2008-05, Vol.36 (9), p.3150

2008

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scNPF: an integrative framework assisted by network propagation and network fusion for preprocessing of single-cell RNA-seq data

BMC genomics, 2019-05, Vol.20 (1), p.347-347, Article 347

2019

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Aberrant gene expression in humans

PLoS genetics, 2015-01, Vol.11 (1), p.e1004942-e1004942

2015

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Gene Module Analysis Reveals Cell-Type Specificity and Potential Target Genes in Autism's Pathogenesis

Biomedicines, 2021-04, Vol.9 (4), p.410

2021

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Cluster analysis of replicated alternative polyadenylation data using canonical correlation analysis

BMC genomics, 2019-01, Vol.20 (1), p.75-75, Article 75

2019

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APAtrap: identification and quantification of alternative polyadenylation sites from RNA-seq data

Single-nucleus gene and gene set expression-based similarity network fusion identifies autism molecular subtypes

Expectation-Maximization Approach to Fault Diagnosis With Missing Data

Commonality in dysregulated expression of gene sets in cortical brains of individuals with autism, schizophrenia, and bipolar disorder

Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation

A Denoising Method for Seismic Data Based on SVD and Deep Learning

SRGS: sparse partial least squares-based recursive gene selection for gene regulatory network inference

Determinants of public T cell responses

Feature selection for high-dimensional multi-category data using PLS-based local recursive feature elimination

An analytical method for the identification of cell type-specific disease gene modules

Shared and Cell-Type-Specific Gene Expression Patterns Associated With Autism Revealed by Integrative Regularized Non-Negative Matrix Factorization

Cell Type-Specific Gene Network-Based Analysis Depicts the Heterogeneity of Autism Spectrum Disorder

detectIR: a novel program for detecting perfect and imperfect inverted repeats using complex numbers and vector calculation

scAPAmod: Profiling Alternative Polyadenylation Modalities in Single Cells from Single-Cell RNA-Seq Data

The cell-free DNA methylome captures distinctions between localized and metastatic prostate tumors

A novel feature selection method to predict protein structural class

stAPAminer: Mining Spatial Patterns of Alternative Polyadenylation for Spatially Resolved Transcriptomic Studies

Cell Type-Specific Predictive Models Perform Prioritization of Genes and Gene Sets Associated With Autism

Genome-Wide Comparative Analyses of Polyadenylation Signals in Eukaryotes Suggest a Possible Origin of the AAUAAA Signal

Laser-Induced Breakdown Spectroscopy for Rapid Discrimination of Heavy-Metal-Contaminated Seafood Tegillarca granosa

Genome level analysis of rice mRNA 3'-end processing signals and alternative polyadenylation

scNPF: an integrative framework assisted by network propagation and network fusion for preprocessing of single-cell RNA-seq data

Aberrant gene expression in humans

Gene Module Analysis Reveals Cell-Type Specificity and Potential Target Genes in Autism's Pathogenesis

Cluster analysis of replicated alternative polyadenylation data using canonical correlation analysis

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